BAC Information

Click to search

BAC

Clone NameMSMg01-396D02
Chromosome4 (Build37)
Map Location 118,983,745 - 118,984,182
singlet/doubletsinglet
Overlap genePpih
Upstream geneHyi, BC059842, Med8, Elovl1, Cdc20, Mpl, Tie1, LOC545675, LOC666596, 2610528J11Rik, 6330530A05Rik, 1110020C03Rik, Ebna1bp2, LOC100041290, Olfr62, Olfr1343-ps1, Olfr1342, Olfr1341, Olfr1340, Olfr1339, Olfr1338, Olfr1524-ps1, Olfr1337, Olfr219-ps1, GA_x5J8B7W3BSW-40181-41086, Olfr1335, Olfr1333, GA_x5J8B7TQTH0-2-774, Olfr1332-ps1, Olfr1331, Olfr1330, Olfr1329, Olfr1519, Lao1, LOC666703, OTTMUSG00000008833, Slc2a1, Zfp691, Ermap, Ccdc23, 4930538K18Rik, AU022252, Lepre1, Cldn19, Ybx1
Downstream gene1700041C02Rik, Ldha-ps2, LOC100041471, Ppcs, Zmynd12, BC057371, LOC666766, LOC384052, AA415398, Foxj3, Guca2a, Guca2b, Hivep3, Edn2, Foxo6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-396D02.T7 (MSMg01no396_d02.b1)MSMg01-396D02.TJ (MSMg01no396_d02.g1)
ACCAG496830AG496831
length741737
length of high quality
(start - end)
404 (34 - 437)438 (66 - 503)
definitionCHROMAT_FILE: MSMg01no396_d02.b1 PHD_FILE: MSMg01no396_d02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:16 2005CHROMAT_FILE: MSMg01no396_d02.g1 PHD_FILE: MSMg01no396_d02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:16 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TGCGAGCGCTATACGACTCACTATTTTTCGAGGATCCGCGGAATTCTTGT
TGCTCTTCTAAATAATTGTCACAAGCATAGTAGCTTGAAATAACACAAAT
TTAGTATCTAATAATCCTGAAGGTTAGAAGTTGGAAATCAGTCCCCCTGT
TCCATGGGCCAGGTGTCACATGGCCAGGTTCTTCTGGAGTCCTAGGAGAG
ACTCCGTCTCCTTGCCTTTAGCATCTACTAGAAGCTGCAGGCGTGCTTTG
GCTCATGCCCACAGCCATGTTCAGTGCCAGCAATGGGCAGGTCCCTGATA
TGTCTCACTCTAAACATAACTTCTGTCATTTCCCTTTCACTCCTGTCCCT
CAATCACAAGGAGCCCACCCAGACAATCCAGGATCATTTCCCACCCCAAT
GCCAGTGGACGTGTGTGTGAGTGTGCATGCATGTTGGTATGGATACATGT
GTTGATCGGTATTCATCCCCCATTGTTCTTTCTTTGCACTCCATATATAG
ACTCTCTCCATCATATCCACAGTTCATGGTACTGTTAGCATCGCTGGCCT
TCTTGCTCTGGAGACTCTCCGTTTCTGCCTCCCCTGGCTGTTGTTATGCT
CATCCCTTCGCCTGTTCATCCGTTTATCCCAAACTCTTGCCTTCCCGCCT
CGTTTGGCTATTACCCTCTTCTTCACCTTTTGAATCATCCCCTCCTTTCC
CCCCTTCTTTCTAACCTCTATCCTTTCTCTTTTCTCGTTAC
TGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTTAGGTAGAGAGAAGTGTTGGAGCCAAGACTTAG
GGTGCGAAGAGCAGGAGGCACACACTTGTAGGACCTCCTTAGAAAAGAGC
CAGGAGCTTGATGACACCGGACCAGAGGAGACAGTGGCAGAAGGGGTCAC
GGAGGGGCAGGTAGGGTACAGGTCACAAGGATTCCAAATGCAATGCCAAG
AAGTGGAATTTTATTCAGTGGGCATCAGGATCAGAGCCAAAGTCCCAGTA
AGTGCTGGGCAGGTTAATGAATGGGTCCAAGCTTGAACTCTCTTTCCCAA
AGGAGCCTGGAACTGTGAACAGGGACAGATGGTCTAGAAAACTGGCTCCT
CGGTAATAAGCATGAGACCCCTGACCACAAAGACTCAGGACACCCATCAG
GACCTACCTCGATCTTCCTCATCACTAGAAGTCCGTCAATGATTTTTCCT
GCAGAAGAACATTAAGTAAGGCTCCCTTCTTGGTGTGATCACAGTGTCTT
CCAGCTCCCAGGGACCTTGTTCCCTTTATATCTTTTTTGATCCCCTCACA
ACGTAAGGGAGATTAAGGCTTGGTGAGGGAGCTTTACTCCCCTACGCTCC
GTGTGACTTTCCTCTTCGACAGAGTTCCGTTCTTTTATCTTATTGTACCC
CCTTTCCTCTTTTTTCCTGGCTATTTCCTAGGGTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no396_d02.g1 MSMg01no396_d02.g1 CHROMAT_FILE:
MSMg01no396_d02.g1 PHD_FILE: MSMg01no396_d02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:16 2005
         (438 letters)



>mm_chr4_118983545_118984382
          Length = 838

 Score =  839 bits (434), Expect = 0.0
 Identities = 437/438 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttaggtagagagaagtgttggagccaagacttagggtgcgaagagcaggaggcacacac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttaggtagagagaagtgttggagccaagacttagggtgcgaagagcaggaggcacacac 260

                                                                       
Query: 61  ttgtaggacctccttagaaaagagccaggagcttgatgacaccggaccagaggagacagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgtaggacctccttagaaaagagccaggagcttgatgacaccggaccagaggagacagt 320

                                                                       
Query: 121 ggcagaaggggtcacggaggggcaggtagggtacaggtcacaaggattccaaatgcaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggcagaaggggtcacggaggggcaggtagggtacaggtcacaaggattccaaatgcaatg 380

                                                                       
Query: 181 ccaagaagtggaattttattcagtgggcatcaggatcagagccaaagtcccagtaagtgc 240
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 381 ccaagaagtggaattttattcagtgggcatcaggatcagagccaaaatcccagtaagtgc 440

                                                                       
Query: 241 tgggcaggttaatgaatgggtccaagcttgaactctctttcccaaaggagcctggaactg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgggcaggttaatgaatgggtccaagcttgaactctctttcccaaaggagcctggaactg 500

                                                                       
Query: 301 tgaacagggacagatggtctagaaaactggctcctcggtaataagcatgagacccctgac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgaacagggacagatggtctagaaaactggctcctcggtaataagcatgagacccctgac 560

                                                                       
Query: 361 cacaaagactcaggacacccatcaggacctacctcgatcttcctcatcactagaagtccg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cacaaagactcaggacacccatcaggacctacctcgatcttcctcatcactagaagtccg 620

                             
Query: 421 tcaatgatttttcctgca 438
           ||||||||||||||||||
Sbjct: 621 tcaatgatttttcctgca 638


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 838
Length adjustment: 9
Effective length of query: 429
Effective length of database: 829
Effective search space:   355641
Effective search space used:   355641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)