Query= MSMg01no396_i24.b1 MSMg01no396_i24.b1 CHROMAT_FILE:
MSMg01no396_i24.b1 PHD_FILE: MSMg01no396_i24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:43 2005
(427 letters)
>mm_chr4_68645205_68646032
Length = 828
Score = 777 bits (402), Expect = 0.0
Identities = 419/426 (98%), Gaps = 5/426 (1%)
Strand = Plus / Minus
Query: 5 gaattc-aaaggggt--ttctttctgtttgcttacttaacattttcctgtttcctttggc 61
|||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 gaattcaaaaggggtaat--tttctgtttgcttacttaacattttcctgtttcctttggc 571
Query: 62 agcagtgaccccaaatgattcaggaaacatccctataataccagtacagtcttaaagttt 121
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 570 agcagtgaccccaaatgattcaggaaacatccccataataccagtacagtcttaaagttt 511
Query: 122 taataagtttgactacctttcccgatatttcagatttaaacatgaaattgaaaatgagat 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 taataagtttgactacctttcccgatatttcagatttaaacatgaaattgaaaatgagat 451
Query: 182 gcaatacaatgtagggcttgaccttcaaagaacatttaagtcctggctcagtacctcatt 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 gcaatacaatgtagggcttgaccttcaaagaacatttaagtcctggctcagtacctcatt 391
Query: 242 ggtaattttaaacatgtgccctgttgttcagttaaacatactaacacataccctaggaag 301
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 390 ggtaattttaaacatgtgccctgttgttcagttaaacatacaaacacataccctaggaag 331
Query: 302 agagtggaccagaacaaattagaacccctgtgtccttcactttcctttcaactatgttca 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 agagtggaccagaacaaattagaacccctgtgtccttcactttcctttcaactatgttca 271
Query: 362 caagtgaggatactatcatagtcataggggttccatttgtgcagcatgaatgcagatgtg 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 caagtgaggatactatcatagtcataggggttccatttgtgcagcatgaatgcagatgtg 211
Query: 422 cccaag 427
||||||
Sbjct: 210 cccaag 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 427
Length of database: 828
Length adjustment: 9
Effective length of query: 418
Effective length of database: 819
Effective search space: 342342
Effective search space used: 342342
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no396_i24.g1 MSMg01no396_i24.g1 CHROMAT_FILE:
MSMg01no396_i24.g1 PHD_FILE: MSMg01no396_i24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:43 2005
(463 letters)
>mm_chr4_68459530_68460392
Length = 863
Score = 880 bits (455), Expect = 0.0
Identities = 461/463 (99%)
Strand = Plus / Plus
Query: 1 tccaggtccttataagcttcagtccaggccttggccatgtttgccagcgtaaactccatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccaggtccttataagcttcagtccaggccttggccatgtttgccagcgtaaactccatg 260
Query: 61 atctggatgtcggtgatggggcagttgcactgtgggaactcctcagcacactggcagcga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atctggatgtcggtgatggggcagttgcactgtgggaactcctcagcacactggcagcga 320
Query: 121 cactggctgttctgacacacatactctccctctccattgcacatgatgtaactcaaggcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cactggctgttctgacacacatactctccctctccattgcacatgatgtaactcaaggcc 380
Query: 181 gactgaacaaacttctcttgcagatactgcgggaagattatctgaagacctggttagaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gactgaacaaacttctcttgcagatactgcgggaagattatctgaagacctggttagaaa 440
Query: 241 tagcaagaaggtaaaatcagaaaggataaaaaggtgttttattaacagcctccaaaggtg 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tagcaagaagggaaaatcagaaaggataaaaaggtgttttattaacagcctccaaaggtg 500
Query: 301 acaagaatctggccctgtaaggcttctccctgtgcactggaataaaaatatagattctta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acaagaatctggccctgtaaggcttctccctgtgcactggaataaaaatatagattctta 560
Query: 361 gatatagatgggcagcaaaatgtggagccttcagttgcatcgcttatacttcactgtctt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gatatagatgggcagcaaaatgtggagccttcagttgcatcgcttatacttcactgtctt 620
Query: 421 cggccatgaccttggttctcttggaaattcagacattgctctg 463
|||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 621 cggccatgaccttggttctcttggaaatgcagacattgctctg 663
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 863
Length adjustment: 10
Effective length of query: 453
Effective length of database: 853
Effective search space: 386409
Effective search space used: 386409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
