BAC Information

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BAC

Clone NameMSMg01-396L03
Chromosome4 (Build37)
Map Location 154,350,756 - 154,351,075
singlet/doubletsinglet
Overlap genePank4
Upstream geneBC046331, Lrrc47, 1190007F08Rik, Ccdc27, Trp73, Wdr8, 1200015A19Rik, Megf6, Arhgef16, Prdm16, LOC100043342, LOC100042178, Actrt2, B230396O12Rik, Mmel1, 2810405K02Rik, Tnfrsf14, Hes5, LOC100043358
Downstream genePlch2, Pex10, Rer1, Morn1, Ski, 2610002J02Rik, Prkcz, Gabrd, 2010015L04Rik, Tmem52, Gnb1, Nadk, A530082C11Rik, Cdc2l1, Mmp23, Mib2, B930041F14Rik, Ssu72, EG381582, Atad3a, Vwa1, A230069A22Rik, E230028L10Rik, Mrpl20, Ccnl2, Aurkaip1, Mxra8, Dvl1, Tas1r3, BC002216, Cpsf3l, Pusl1, Centb5, Ube2j2, C1qdc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-396L03.T7 (MSMg01no396_l03.b1)MSMg01-396L03.TJ (MSMg01no396_l03.g1)
ACCAG497210AG497211
length792761
length of high quality
(start - end)
---320 (66 - 385)
definitionCHROMAT_FILE: MSMg01no396_l03.b1 PHD_FILE: MSMg01no396_l03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:53 2005CHROMAT_FILE: MSMg01no396_l03.g1 PHD_FILE: MSMg01no396_l03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCCTCXXXXXXXXXXXXXXXXXXXXTTCAGAGGATCCGCGGAATTCAGGA
GTGTTTTCGCAGTAGTTCCAGGAGACAGAATAGTGGGGGGTGGGCGGGCA
GTTGGTGACAGGAGAAGCTGAGCTGAGCTGGGACAGAGAACATATTGTTA
GGAGACGTGATAAGAGAGTATGGAGAATATAAAGGGAAGATCTACAGGAA
TGGGATTTGAGACAGGCTTTCTCTGTGTGGCCCTGGATGTTATGGATCTC
ACTTCGTAAACCAACCTAAGCCTGATCTTAGAGATCCGCCTGCCTCTGCC
ACCTGAGTGATGTGTTTTTTGCAACACTGGAATATTTCCCTGCTCTTGTA
AGGCCCACGCCTTTGGACCTTTGCGTGCTTCTTCTTTGTCTCCGTTATAC
TGTGAGTCCCACCCCCTCTCTTTTTTTGACATACATTCGTTTTTGTGCAC
GGATCACTTTTTTTAAGTGTTCCCGTACGACCGCTCCCTTTTCCCGCCCC
TCTGTTCCCCCCCTCCCTCCCTTGCCTCTTTTTTTTCCCCACTTTCCTCT
TTTTTTTTTTTCCCTTGTTTTTTTTTTCCCACCCTCTTCTTCTTCTTTTT
CCCCCATTACTTTCGTTTCCCTTTTTTTTTCTTCTTCTTGCTCATCTCCT
TTTTTCTTTTTTTCTTCCTTTTGTCTTTCTTCTCTTCTCCCCCCCCTCTT
TTTTTTGCTCTATTTCTTTTCCCTCTCTCTTCGGCCTTTTCCTTTTTTTT
TTTTTCCCTCTCTTTGTGCTCTTCTATTTCCCCTTTTCCCTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXAACTTCCCAGATCCCTACTCCAAGGTGAGCCATGT
AGACTACAAGTAGGGTGCAGAGGACTCAGTAGCATTTTGTTGTGCCAGCC
TCAGGAGGTCTAAGCTCACACTGGCTAGTTCTAGGTGCACAGCTCTACTC
TAGGCGTGTGTTAGCACTCCTCCATCCCTCTGGCTAGGAGCCGTGGGCCC
CTTGTTTCCCTGTTGTCAGCCACCTTGCCCTTCCTCAGCTGCCCATGCAC
AGTGGCCTCTGGGTGTGCATACCCGGTGCCCTCCTAACTCCACTAAGTCT
TGTGGGCCAGAGTGCCTCCCTGCTTCACCCAACACCATGTATACCTGAGG
ACTGCCCCAAATCAGTAAGTAGCCTGGTACCCAGTCCTGAGCGTTACCTC
TCGGGAGCACGACACCTTATGCCCCCTTCTCCCTGGTTAGTGTTTTCATT
CTCCGTTGAGGCCTCTTCTTCTGCTGCCCTGCAGAGATCTCCCTATAGTC
TTACCTGTACCGCTGTTGCCCTTTTCCTTTCATTTGCGTTTCTTCATCTT
TTCGCCTGTGCGGCCTTTTCTCCCGCTTTTTTCATATTCTTCATGTTTTT
TTCCCTTCCTATGTTTCTTCTATCCTTTTTTCCCCTCTCTTTCCTTTCTC
TAATATTGTTTCCTTACCGTTTTATTACTCTCCCGGTCCTCTGTTCTCCT
TTACTTCTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no396_l03.g1 MSMg01no396_l03.g1 CHROMAT_FILE:
MSMg01no396_l03.g1 PHD_FILE: MSMg01no396_l03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:53 2005
         (320 letters)



>mm_chr4_154350556_154351275
          Length = 720

 Score =  611 bits (316), Expect = e-179
 Identities = 319/320 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacttcccagatccctactccaaggtgagccatgtagactacaagtagggtgcagaggac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacttcccagatccctactccaaggtgagccatgtagactacaagtagggtgcagaggac 260

                                                                       
Query: 61  tcagtagcattttgttgtgccagcctcaggaggtctaagctcacactggctagttctagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcagtagcattttgttgtgccagcctcaggaggtctaagctcacactggctagttctagg 320

                                                                       
Query: 121 tgcacagctctactctaggcgtgtgttagcactcctccatccctctggctaggagccgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgcacagctctactctaggcgtgtgttagcactcctccatccctctggctaggagccgtg 380

                                                                       
Query: 181 ggccccttgtttccctgttgtcagccaccttgcccttcctcagctgcccatgcacagtgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggccccttgtttccctgttgtcagccaccttgcccttcctcagctgcccatgcacagtgg 440

                                                                       
Query: 241 cctctgggtgtgcatacccggtgccctcctaactccactaagtcttgtgggccagagtgc 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctctgggggtgcatacccggtgccctcctaactccactaagtcttgtgggccagagtgc 500

                               
Query: 301 ctccctgcttcacccaacac 320
           ||||||||||||||||||||
Sbjct: 501 ctccctgcttcacccaacac 520


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)