Query= MSMg01no396_m24.b1 MSMg01no396_m24.b1 CHROMAT_FILE:
MSMg01no396_m24.b1 PHD_FILE: MSMg01no396_m24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:02 2005
(416 letters)
>mm_chr4_17818537_17819353
Length = 817
Score = 745 bits (385), Expect = 0.0
Identities = 406/413 (98%), Gaps = 1/413 (0%)
Strand = Plus / Plus
Query: 5 gaattctttctgta-atccctagtgatagtatagctaggctaatgcatattttatcttga 63
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttctgtacatacctagtgatagtatagctaggctaatgcatattttatcttga 264
Query: 64 catctacttatgataattattctagcttatatatcatccagaagtttggattccctgaac 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 catctacttatgataattattctagcttatatatcatccagaagtttggattccctgaac 324
Query: 124 cctatacatcttatacttttccagtttcatagtaatagaaaattagcaattcacattaag 183
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cctatacgtcttatacttttccagtttcatagtaatagaaaattagcaattcacattaag 384
Query: 184 atattgcaggaacaatattaccatttacccaactcttgggacacaccacatcaagaattg 243
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 385 atattgcaggaacaatattaccatttacccaaatcttgggacacaccacatcaagaattg 444
Query: 244 tatctgtagaactatatggcaatgtttcctaagcatagaacctgaaagttagttaagttt 303
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct: 445 tatctgtagaactatatggcaatgtttcctaagcagagaacctgaaagttagttatgttt 504
Query: 304 cttatagccttgactaaaggcctggcctgacagaagtagcttaagtaaggaaggatttac 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cttatagccttgactaaaggcctggcctgacagaagtagcttaagtaaggaaggatttac 564
Query: 364 tttcttacagttcaaaagtacagtccactatgacaaggaagtcatgagcttag 416
|||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 565 tttcttacagttcaaaggtacagtccactatgacaaggaagtcatgagcttag 617
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 416
Length of database: 817
Length adjustment: 9
Effective length of query: 407
Effective length of database: 808
Effective search space: 328856
Effective search space used: 328856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no396_m24.g1 MSMg01no396_m24.g1 CHROMAT_FILE:
MSMg01no396_m24.g1 PHD_FILE: MSMg01no396_m24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:02 2005
(471 letters)
>mm_chr4_18012913_18013782
Length = 870
Score = 835 bits (432), Expect = 0.0
Identities = 461/471 (97%), Gaps = 1/471 (0%)
Strand = Plus / Minus
Query: 1 tgggaataagaatgcagaggtccatctgcattgggcaaagactttgcacaatgtccacat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 tgggaataagaatgcagaggtccatctgcattgggcaaagactttgcacaatgtccacat 611
Query: 61 cttttaaaaaatgatcaatgcatagacccactgtaatagcagaaggaagtaacatattac 120
||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 610 cttttgaaaaatgatcaatgcatagacccactgtaatagcagaa-aaagtaacatattac 552
Query: 121 caagttgctttttaaaacatttttgaacgtaataattttggaaaatttctaaagtatttt 180
||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 551 caagttgctttccaaaacatttttgaacgtaataatttaggaaaatttctaaagtatttt 492
Query: 181 aaaggagtcattctttacagttaacctttgaatttagagaggcaaattcttgagtaaata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 aaaggagtcattctttacagttaacctttgaatttagagaggcaaattcttgagtaaata 432
Query: 241 aaatgaatgaagatgtttgtaagtaaaggagctaacatttcagaatattataaaatatta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 aaatgaatgaagatgtttgtaagtaaaggagctaacatttcagaatattataaaatatta 372
Query: 301 tgcttactactgttccaaattgatatagtaatttgtgaaatttggaaatctttataaaat 360
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 371 tgcttactactgttccaaattgatatagtaatttgtgaagtttggaaatctttataaaat 312
Query: 361 tcctgtagttttagggtagattattatgaaaaaaatctggatgtttaaatgatgtagttg 420
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 311 tcctgtagttttagggtagattattatgaaaaaattctggatgtttaaatgatgtagttg 252
Query: 421 atgtgggtcactctcttattcattagtatttattanatcatgacatagtgc 471
||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 251 atgtgggtcactctcttattcattagtatttattaaataatgacatagtgc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 870
Length adjustment: 10
Effective length of query: 461
Effective length of database: 860
Effective search space: 396460
Effective search space used: 396460
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
