BAC Information

Click to search

BAC

Clone NameMSMg01-397C08
Chromosome4 (Build37)
Map Location 27,047,445 - 27,047,670
singlet/doubletsinglet
Overlap genenone
Upstream geneManea, Bhmt-ps1, LOC665079, Gng2-ps1
Downstream geneLOC100040691, Tpm3-rs2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-397C08.T7 (MSMg01no397_c08.b1)MSMg01-397C08.TJ (MSMg01no397_c08.g1)
ACCAG497554AG497555
length755828
length of high quality
(start - end)
415 (70 - 484)226 (72 - 297)
definitionCHROMAT_FILE: MSMg01no397_c08.b1 PHD_FILE: MSMg01no397_c08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:28 2005CHROMAT_FILE: MSMg01no397_c08.g1 PHD_FILE: MSMg01no397_c08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGA
ATTCCTTAATCTTTTCAAATTTGACCTTAGTACAAGGAGATAGGAATGGA
TCAATTTGCATTCTTCTACATGATAACTGCCAGTCGTGCCAGCACCATTT
GTTGAAAATGCTGTCTTTTTTTCCACTGGATGGTTTTAGCTCTCTTGTTG
AAGATCAAGTGACAATAGGTGTGTGGGTTCATTTCCAAGTCTTCAATTCT
ATTCCATTAGTCTACTTTTCTGTCCCTATACCAGTACCATGCAGTTTTTA
TCACAATTGCTCTGTAGTACATTTTTAGGTCAGGTATGGTGATTCCACCA
GAGGTTCTTTTATCCTTGAGAAGACTTTTTGCTATCCTAGGTTTTTTGTT
ATTCCAGATGAATTTGCAGGTTGCCCTTTCTAATTCGTTGAAGAATTGAG
TTAGAATTTTGATGGTGATTGCCTTGAATCTGTAGATTGCTTTTGCCAAG
ATATCCATTTGTACTATATTGATCCTGCCCTTCCACGAGCATGGTAGATC
TTTCCATCTTCTGAGACCTTCCGCCTCCCATTTCTCTTATACCTTCTTGC
CTCTCCACAGACTTCACCACATATCCCTCCTCTTTTTTATACCCTTTCCT
CCCCACTCTTCTTGCCGCCCACATATGTTTCTCCCCTTTTATATCCTTGT
TTCGATATTTATCTCCCTCTTCCACACCTCCTTCGACTTTTTTGTCCTCA
TCCAC
GATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCAAATGGCTGAGAA
GCACCTGAAAAAATATCTTCAGACTATTTCTATACATACTATCTTTCTAC
ATTTCTTTTAAACTTGAGGAGATTTATGTGAGCTGAATCTTTTGTGAAAT
ATAATATATGCATGTTTTGTCTGTAGACTTCTTAAATGTTCATTTATTTA
TGGTTATTAAAATATAGGGTTTTATTGGTTTCAATCTTTACGTGAAGGTT
GCGATTTATGCCTATCCTTTTTTTTTATTACGCATCCCCTACCCGCACAC
ATCCTTCTTATCTTATTTGTATCTTCTACTCCCCCCTTTCTCCCCCTTGT
TCTCCTGAACCCCACGTCAGGTTTTTCTAATATTTCTTCTTATATCTGAC
TTCCTCTCGTACTCCCCACCCCTCGGCCCACTGTTCTTTCGCGGTTTCCC
CCTCCCCTCTTTTTCCGTCTTTTTTTTATTTCTCCGCCCCCTTCCCCTAC
TTTTCCTCTCCTTTTACTTGCCATTCTTTCTCCCACCTTTCCCTCTTTCC
CCGCTATCTTATTTTAATCCCTTTCTTCCTCCCGTCTCTTTCCCCTCATC
TTCACGTCCTCTTTTTATTTTCTGGCTTTTTACCCCTATCTCTCTTCTTT
TTTCTTTTCTCCCCCTCCTTATCCCCCTTTTCCCCTTTATACTCTCTCAC
ATTCTCCTCACGATATCTACCGCGTCTTCTTTCTTCCCCTTCCTCAACTT
CCTCTTTCCTCTTCTCTCTCTCTTTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no397_c08.g1 MSMg01no397_c08.g1 CHROMAT_FILE:
MSMg01no397_c08.g1 PHD_FILE: MSMg01no397_c08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:28 2005
         (226 letters)



>mm_chr4_27047245_27047870
          Length = 626

 Score =  416 bits (215), Expect = e-121
 Identities = 224/227 (98%), Gaps = 2/227 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcacctgaggaataccaaatggctgagaagcacctgaaaaaatatcttcagactatttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcacctgaggaataccaaatggctgagaagcacctgaaaaaatatcttcagactatttct 260

                                                                       
Query: 61  atacatactatctttctacatttcttttaaacttgaggagattt-atgtgagctgaatct 119
           |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 261 atacatactatctttctacatttcttttaaacttgagg-gattttatgtgagctgaatct 319

                                                                       
Query: 120 tttgtgaaatataatatatgcatgttttgtctgtagacttcttaaatgttcatttattta 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tttgtgaaatataatatatgcatgttttgtctgtagacttcttaaatgttcatttattta 379

                                                          
Query: 180 tggttattaaaatatagggttttattggtttcaatctttacgtgaag 226
           |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tggttactaaaatatagggttttattggtttcaatctttacgtgaag 426


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 226
Length of database: 626
Length adjustment: 9
Effective length of query: 217
Effective length of database: 617
Effective search space:   133889
Effective search space used:   133889
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)