BAC Information

Click to search

BAC

Clone NameMSMg01-397C21
Chromosome4 (Build37)
Map Location 92,367,829 - 92,368,221
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC620016, LOC654475, 4930577H14Rik, LOC664886, 1700011H22Rik, LOC68280
Downstream geneLOC620269, LOC384125, Tusc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-397C21.T7 (MSMg01no397_c21.b1)MSMg01-397C21.TJ (MSMg01no397_c21.g1)
ACCAG497580AG497581
length767792
length of high quality
(start - end)		414 (67 - 480)403 (72 - 474)
definitionCHROMAT_FILE: MSMg01no397_c21.b1 PHD_FILE: MSMg01no397_c21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:31 2005CHROMAT_FILE: MSMg01no397_c21.g1 PHD_FILE: MSMg01no397_c21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTGTCTGGTCCCGGAATGGGCTTTTTCAACAATTGGGCAAGTATTCTCA
AACAAACTACAAAGGTTCTGTATCATCTAATAACTGACCAACTTATAAGG
AGTTATACACTTGACTTAAATTTTTGTTATTCCATGGCTTAAGGGAGAAA
CATTTGCCATCCAAATGGGATAGATGCCTTATAAATTTTTTAACTAATAT
TTTGTAATTTGCTCATAAACAAATACATTTCTATAGACCTTTTACACTTA
CCTCTATTTTTGATTCCTGCCCATCAGCCCAAATCCCCACCCTTACATTC
CTTAAACCATTCTACTGCTGGTGTTCATTCCTTCTCTATACTTTCAAACA
ACCTATCATCTACTGACATCTTTCCTTTGAGGTATCCACTAATGGTTGCT
TTCCAGTTCTCTGACAAGTACTACCACTTATATACACGGTTGTAAATATT
TAGGGTCATACTCCACATATGGGAGATAACAGTACCTCTGGTTTGCTTTT
CTGAAATGCCTCCTANAGAATCTTTTCTAAATGTGAAGGAAAAGGAAACC
CATGGGACAACTTTATTTTTAAGGACATTTTCCGTGCATTTAACTCCCCA
GAAAGGCCAAGGCCCATATTTTCCAAAAAGGACTTGAATTTTGATTGGGA
TTTAAAATCTAATAAACACCAGGCCCCCTTTTGCGAAAATAAGAAATAAC
TCCCCACCTCTGCCTGC

GATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGGGAAATAGCACCCTTCAAAATAGCTAT
GAATAAAATAAAACATCTTGGGGTAACATTAACCAAATAAATAGAAGACT
TGTATAACAAAATCTTCAGATACATAAAGAAAGAAACTGACAAAGATATC
AGAAAATAGAAAAATATCCCATGCTTATTCATCAGTAGAATTAACATAGT
AAAAATAGCCATTTTTATCAAAAGCATTCTTCAGGATCAATGCAATACGT
AACAAAATTGCCACAGTATTCTTAATAGATTTTGAAAAGCCAATAGCTAG
TTTCTTATGGAAGAATTAAAAAACAAAACAGAACAAAACAACCCAGGATT
GCTAAAACTAANAGTACACTCAACAATAAAGGGATTTCTGGAGGTTTTTA
TTATCCCTAATTTGAAGCTGTACTGTAGACAGTGGATGGGGTAAGGTGAA
TAAAATAAGGAGGGAAAAAAAAATTATTTAATAAAATTTTTATAAATTTA
AATACCTATTACAAAATTCTATTTTCCTTTTTATTTATTTTGGAAGAGAA
TATTAACCACTTCCTCAACTCTTGAAAATTACTTTAAAGGATTTTTTGGA
AAAGGTTTTTATAACTCCCCCCAGGTTGGGGGGGCTTTTATCCCACTAAC
CCCAAACCTTTGGGTAATTTTTTTTTTAAGGGCCCCCGCATATACCTCTC
CCCCCACTTAGTTTCTTATCCCGTGTGTGAAAAATCCTTTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no397_c21.b1 MSMg01no397_c21.b1 CHROMAT_FILE:
MSMg01no397_c21.b1 PHD_FILE: MSMg01no397_c21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:31 2005
         (414 letters)



>mm_chr4_92367629_92368442
          Length = 814

 Score =  669 bits (346), Expect = 0.0
 Identities = 387/414 (93%), Gaps = 21/414 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgggctttttcaacaattgggcaagtattctcaaacaaactacaaaggttctgtatcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgggctttttcaacaattgggcaagtattctcaaacaaactacaaaggttctgtatcat 260

                                                                       
Query: 61  ctaataactgaccaacttataaggagttatacacttgacttaaatttttgttattccatg 120
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctaataactgaccaaattataaggagttatacacttgacttaaatttttgttattccatg 320

                                                                       
Query: 121 gcttaagggagaaacatttgccatccaaatgggatagatgccttataaattttttaacta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcttaagggagaaacatttgccatccaaatgggatagatgccttataaattttttaacta 380

                                                                       
Query: 181 atattttgtaatttgctcataaacaaatacatttctatagaccttttacacttacctcta 240
           ||||||||||||||||||| |||||||                     ||||||||||||
Sbjct: 381 atattttgtaatttgctcaaaaacaaa---------------------cacttacctcta 419

                                                                       
Query: 241 tttttgattcctgcccatcagcccaaatccccacccttacattccttaaaccattctact 300
           |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct: 420 tttttgattcctgcccatcaccccaattccccacccttacattccttaaaccattctact 479

                                                                       
Query: 301 gctggtgttcattccttctctatactttcaaacaacctatcatctactgacatctttcct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 gctggtgttcattccttctctatactttcaaacaacctatcatctactgacatctttcct 539

                                                                 
Query: 361 ttgaggtatccactaatggttgctttccagttctctgacaagtactaccactta 414
           ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 540 ttgaggtatcccctaatggttgctttccagttctctggcaagtactaccactta 593


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 814
Length adjustment: 9
Effective length of query: 405
Effective length of database: 805
Effective search space:   326025
Effective search space used:   326025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |