BAC Information

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BAC

Clone NameMSMg01-397G12
Chromosome4 (Build37)
Map Location 12,581,809 - 12,582,154
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039862, Gem, Cdh17, Ppm2c, Tmem67, C430048L16Rik, LOC230010, LOC623671, LOC100039958, Rbm12b, 6720467C03Rik, LOC545592
Downstream geneOTTMUSG00000004461, LOC100039988
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-397G12.T7 (MSMg01no397_g12.b1)MSMg01-397G12.TJ (MSMg01no397_g12.g1)
ACCAG497754AG497755
length746755
length of high quality
(start - end)
244 (77 - 320)388 (81 - 468)
definitionCHROMAT_FILE: MSMg01no397_g12.b1 PHD_FILE: MSMg01no397_g12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:50 2005CHROMAT_FILE: MSMg01no397_g12.g1 PHD_FILE: MSMg01no397_g12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTCAATACCAACCGCG
GAATTCCATATATTGCGGAAAACTAGGAAGCATACCAAGGACAGCCAAGG
ACAAGGCAATGTGTCCTACTAGGAAGACTGATTCTAGAAAACCAGAGTAG
CTTAAGGCTAGAAAAAGGATCTTGGCATGATTCACCTGTCATGTGTCTTG
GGCATCAGCATGGAATCATCCAGCTGTCATGTGTGTGGGCATCAGCATGG
TATTACCCAGCTGTGATGGACCTTGGGCATCAGTATGGTATCATCCAGCT
GTCATGTGTGTGGGCATCTGCTTGGTATCACCCAGCTGTGATGGACCTTG
GGCATCAGCATGGCATCATCCAGCTGTGATGGACCTTGGGCATCAGAGCA
CTTAGTTTATTGGAACCTCCATTTTTCCTTCAATAAAAAAAAACAATATT
TAAAATATTTTAAACATTTAGTCTTTGACATAACGTTTGGAATAACACAA
TTCCCACAACCTCTTGCAGCTCTAAACTGTTGGGCCTGAATCTGCTGTGC
ATGCCTTCTTCTCCCCCTTCCTTGGGGTCAAAAACCTGTACACAAAAGGC
AAGCCAGGCCCAAGCTGAAGCCGCCCAACAACCTAATTTGAAACTCCCCC
TTTTGTTAACCCCACGAAAGGGGGCCTGGGAAAAAAAACCCCAAAAAAAT
TTTGTGCCCCCCTCCCTCGACCCATAGGGTGTACTTAAACTTTATC
NNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTCTCTTCTGTCACCACAG
GCAGAAAGAGACATTGGAGGAGCACTCCACTAATCCTTTTGACTTCTATA
CCACAGCAAAGGCAGACTTGGGACAACTGAGACTTAGAAGGTGATGGCCT
CAGCCATATAAAGAACACTCACACTCAATCAATTTTAATTTTGAAATACT
GAGGTTTTAAAAGAAGTTGGAAAATATAATACAGAAAAATTTCCTCATCC
CATTGCCCGTATTGGAAACACCTTGTACAGTCATGATATCACAGCCAGGA
ATCTTGACAGGGATGCAAAGGAGCATATAAAATCTGTCCATCAGCACAGG
GTGCCTCATGTCACCATTCTATAGTGACACCCACGTCATCCTCCCATGTC
AGCTCACATCACTGCTAATCTGCTCGTCTCTTCTATAATTCTTTTTTAAT
TTTTGAATATTATATAAGGGCCCGGAAAGAAGGCTCATTAATACTGACGG
CTTGCCGGGTACCAATGGGGTATTCCCTTTCTTTCCCCCTCAGGCCCACT
AAATACCCCCCTTGGTCCCCTCATTCCGGCATCCCCTTTGGGGGTGTGTT
CCAACGCTCTTTTCCCCCCTTGCGTTTTGCCTCGTTTCTCTGCCTACTTC
CTACGACCATTCTTATTAGCTCTCCTCTCCTCCCGACCCCTCCTTCTTCA
TTATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no397_g12.g1 MSMg01no397_g12.g1 CHROMAT_FILE:
MSMg01no397_g12.g1 PHD_FILE: MSMg01no397_g12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:50 2005
         (388 letters)



>mm_chr4_12581809_12582596
          Length = 788

 Score =  638 bits (330), Expect = 0.0
 Identities = 342/346 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctctcttctgtcaccacaggcagaaagagacattggaggagcactccactaatcctttt 60
           |||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 346 tctctcctctgtcaccacaggctgaaagagacattggaggagcagtccactaatcctttt 287

                                                                       
Query: 61  gacttctataccacagcaaaggcagacttgggacaactgagacttagaaggtgatggcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 gacttctataccacagcaaaggcagacttgggacaactgagacttagaaggtgatggcct 227

                                                                       
Query: 121 cagccatataaagaacactcacactcaatcaattttaattttgaaatactgaggttttaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 cagccatataaagaacactcacactcaatcaattttaattttgaaatactgaggttttaa 167

                                                                       
Query: 181 aagaagttggaaaatataatacagaaaaatttcctcatcccattgcccgtattggaaaca 240
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 166 aagaagttggaaaatataatacaggaaaatttcctcatcccattgcccgtattggaaaca 107

                                                                       
Query: 241 ccttgtacagtcatgatatcacagccaggaatcttgacagggatgcaaaggagcatataa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106 ccttgtacagtcatgatatcacagccaggaatcttgacagggatgcaaaggagcatataa 47

                                                         
Query: 301 aatctgtccatcagcacagggtgcctcatgtcaccattctatagtg 346
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46  aatctgtccatcagcacagggtgcctcatgtcaccattctatagtg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 788
Length adjustment: 9
Effective length of query: 379
Effective length of database: 779
Effective search space:   295241
Effective search space used:   295241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)