BAC Information

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BAC

Clone NameMSMg01-397N17
Chromosome4 (Build37)
Map Location 81,087,186 - 81,087,401
singlet/doubletsinglet
Overlap geneMpdz
Upstream geneTyrp1, D4Bwg0951e
Downstream geneLOC100040131, LOC100040144, EG668895, LOC100040164, EG545641, Nfib
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-397N17.T7 (MSMg01no397_n17.b1)MSMg01-397N17.TJ (MSMg01no397_n17.g1)
ACCAG498098AG498099
length790818
length of high quality
(start - end)
221 (71 - 291)248 (70 - 317)
definitionCHROMAT_FILE: MSMg01no397_n17.b1 PHD_FILE: MSMg01no397_n17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:25 2005CHROMAT_FILE: MSMg01no397_n17.g1 PHD_FILE: MSMg01no397_n17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCACACCTCCGCGGAATTCC
TACGGGTTTCTTTGCACTTCAGATGCTTTTTAAATAGGGAACACCTTGAG
GGAGTAAAGGCTATCTATACAACATACTTTGCTGCAGGTTGGAAGGTACT
AGAGAGATAATTTCAGAAATGCAAATTTGCATTGATTCAGTGCTGGTTAG
CACTTTCAACATTTAACTAAAGTACGCAAAATGGTTTACAAATGAAATTC
TGGATACGTGTTCTGGAGGTAAGACTGGGGGGGGGAGGTTCTCCTCTCCT
TCCCATCCCCCCTTTGGTGGGTTTAGCCCCCCTTGCCACCCCCCATACAC
CCTTTTTCTTCCCCCTTCCTCCCGTTTCTTCTTTCCTTCCCTTTCCCTTC
TTTCCCCCCCCCCCCCCTCCATCATTCCCTTCCTTTCCCCCCCCTCCTTT
CCTCCTCCTCCTCCTCTCTTCTCCACTAACCCCTCCTCTCCCATCCTTCC
CTCCTCCTCCTCTCTCCCCTATGCCACTCCCACCTCCTATTTCTATCCTC
CCCCCTTTCCCCTTTTTTCTCTCCTCCCCCTTTTGTCCCTTTCTTTCCCT
TTTTCCTATCTCCTCTCTCCCCCTCCTTTCTCCCCCTTATCCTTTCCCCT
TTATTCCCCTTTTTTTCTTTTTCCCCCCCTTTCTCCTTTCCCCCCCCTTT
TTTTTTACTCTCATCTTTTTTCTTCTATTTCTCCCTCTCCTTTTCTTCTC
CCCTTTCCATCCTCTACACCTAGTCCTCCTCTCTTCTCCG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCATGTACTATATCACTTGCCAATAAAATGCT
GCTTAGGCAAGAAATAGGGAAGTGGAAAAGAGAGAGGGTTTCTGGAAATA
AAGTCCGGTGCAAAAGGATTCACCCCCAAACTCTGGAGGAAGGCAGTCTC
CTGAAACTGAGGACCAAGTAACCAGCCATGTGGCAGAACTTAGAATAGAG
TAACAGGATTATTGAGCTATGAGCTTGTCGGGGAAGAGAGCCAAAGCTAT
CAGTCTAAGCACTTAATTATATATAAGAAATTTTAGAGTTGTTATTTTGG
AGACCCAAGTGGATGGGTGAAAAAAACACAGGTTATAGATGGATGAAACT
GCCCAGTATACCCCTGATGAATACATTAATATTATCTCCTTGCCGTCCTA
TATTCCCAATGCCCTATTGTCCTAATTGCAACTCCTCGATTCCCTGCCAT
TTGTCCTCCTTTTCTTCTGAGATATTATCCCCCCTTTTTTTTCTGATCCT
TTACCCTGGTTTTCCCCCTTTGCCCTTTCCCTCGCTTTTTGTTCCTTTAT
TTTCCCCCCCTTCCATATTCTCTCTCTCTTTTTAATCTCTTTTTTTATTA
TCTCTTCCTTTATAACTTTTCTTTCCTATTTTTCTCTATTTAACTCCTTC
TCCTCTACCCTTTACCTTTTTACCTCCTTTTTTCTATCTTCTTTTCTTTC
CTTTATCCTTTTTCCTACCCTTATCGTTCTCTTCATTTCTTCTTTCTCTT
TTCCTTTCTCTATTTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no397_n17.b1 MSMg01no397_n17.b1 CHROMAT_FILE:
MSMg01no397_n17.b1 PHD_FILE: MSMg01no397_n17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:25 2005
         (221 letters)



>mm_chr4_81086986_81087607
          Length = 622

 Score =  395 bits (204), Expect = e-114
 Identities = 213/216 (98%), Gaps = 1/216 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agatgctttttaaatagggaacaccttgagggagtaaaggctatctatacaacatacttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 agatgctttttaaatagggaacaccttgagggagtaaaggctatctatacaacatacttt 357

                                                                       
Query: 61  gctgcaggttggaaggtactagagagataatttcagaaatgcaaatttgcattgattcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 gctgcaggttggaaggtactagagagataatttcagaaatgcaaatttgcattgattcag 297

                                                                       
Query: 121 tgctggttagcactttcaacatttaactaaagtacgcaaaatggtttacaaatgaaattc 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 296 tgctggttagcactttcaacatttaactaaagtacgcaaaatggtttacaaatgaaatcc 237

                                               
Query: 181 tggatacgtgttctggaggtaagactg-gggggggg 215
           |||||| |||||||||||||||||||| ||||||||
Sbjct: 236 tggatatgtgttctggaggtaagactgagggggggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 221
Length of database: 622
Length adjustment: 9
Effective length of query: 212
Effective length of database: 613
Effective search space:   129956
Effective search space used:   129956
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)