Query= MSMg01no398_a23.b1 MSMg01no398_a23.b1 CHROMAT_FILE:
MSMg01no398_a23.b1 PHD_FILE: MSMg01no398_a23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:41 2005
(554 letters)
>mm_chr4_118677704_118678657
Length = 954
Score = 694 bits (359), Expect = 0.0
Identities = 368/371 (99%)
Strand = Plus / Minus
Query: 184 actctgtagacctgtaggctggcttccgactcgcagagatctgcctgcctctgccttcca 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 954 actctgtagacctgtaggctggcttccgactcgcagagatctgcctgcctctgccttcca 895
Query: 244 agtgctggcctcaaaggcatgtgctgcctcctctcagcccagctactatattttttgaga 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 894 agtgctggcctcaaaggcatgtgctgcctcctctcagcccagctactatattttttgaga 835
Query: 304 cagatctctatttagcctcaagcacacagtcctcctgcctcttgagtgctgagatttctg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 834 cagatctctatttagcctcaagcacacagtcctcctgcctcttgagtgctgagatttttg 775
Query: 364 gcctgtgccaccacgcctggtctgagccacatgtgcctgctatttctgaaccctgtttga 423
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 774 gcctgtgccaccacgcctggtctgagccacatgtgcctgctgtttctgaaccctgtttga 715
Query: 424 tgcagcaaatgctttccctcagccatagtcagtccttgaggaaggtcccttgtacagtca 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 tgcagcaaatgctttccctcagccatagtcagtccttgaggaaggtcccttgtacagtca 655
Query: 484 ggggaacgaggctcacaggtgagagcccactcaagcacttttgagcagagtaatgaggag 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 ggggaacgaggctcacaggtgagagcccactcaagcacttttgagcagagtaatgaggag 595
Query: 544 gtagggacaac 554
|| ||||||||
Sbjct: 594 gtggggacaac 584
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space: 513536
Effective search space used: 513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no398_a23.g1 MSMg01no398_a23.g1 CHROMAT_FILE:
MSMg01no398_a23.g1 PHD_FILE: MSMg01no398_a23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:41 2005
(477 letters)
>mm_chr4_118491329_118492210
Length = 882
Score = 611 bits (316), Expect = e-179
Identities = 403/436 (92%), Gaps = 9/436 (2%)
Strand = Plus / Plus
Query: 49 aaaactcaaatgatgcctaagcatgttactgaggcatgagttattttagtttgtaaccta 108
|||||| |||||||| |||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 249 aaaactgaaatgatggctaaacaggttactgaggcatgagttattttagtttgtaaccta 308
Query: 109 gtttcaacctgctggactaatgctcaagtatgcaaaccagcctactaatatgc--tgact 166
|||||| ||||||||| |||||||| ||||||||||||||||||||||| || ||| |
Sbjct: 309 gtttcagcctgctggattaatgctccagtatgcaaaccagcctactaat--gccctgaat 366
Query: 167 cagttgttggctctcagctcactggcgacttcttgcccactcagcaacctggcagtcata 226
||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||
Sbjct: 367 cagttgttggctctcagctcactggcggcttcttgcccagtcagcaacctggcagttata 426
Query: 227 taggctttcttcaccatcttgccagagcttgtcctgaaatagcttttgctgtttttcaac 286
|| ||||||||||||||||||||||||||||||||||| |||||||||| || ||||||
Sbjct: 427 tatcctttcttcaccatcttgccagagcttgtcctgaaacagcttttgctattcttcaac 486
Query: 287 agtta-----gaagccacagcttgtcagagtgcacagaaccagtaagcccatcactaatt 341
||||| ||||||||||||||||||||||||||||||||| ||| |||||||||| |
Sbjct: 487 agttaaaacagaagccacagcttgtcagagtgcacagaaccaggaagtccatcactaact 546
Query: 342 tcaggatccatgctgggtaagtccagtttgtcctcagagctttgatccctgtgtcctttt 401
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 tcaggatccatgctggggaagtccagtttgtcctcagagctttgatccctgtgtcctttt 606
Query: 402 cctggtatatattttagggaatcaatgaagtatgagcgtacaattctcagcatgttagag 461
|||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||
Sbjct: 607 actggtatatattttagggaatcaatgaaatatgagcgtaccattctcaacatgttagag 666
Query: 462 ctcactgagcccctac 477
||||||||||||||||
Sbjct: 667 ctcactgagcccctac 682
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 882
Length adjustment: 10
Effective length of query: 467
Effective length of database: 872
Effective search space: 407224
Effective search space used: 407224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
