BAC Information

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BAC

Clone NameMSMg01-398B23
Chromosome4 (Build37)
Map Location 119,189,801 - 119,190,254
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666596, 2610528J11Rik, 6330530A05Rik, 1110020C03Rik, Ebna1bp2, LOC100041290, Olfr62, Olfr1343-ps1, Olfr1342, Olfr1341, Olfr1340, Olfr1339, Olfr1338, Olfr1524-ps1, Olfr1337, Olfr219-ps1, GA_x5J8B7W3BSW-40181-41086, Olfr1335, Olfr1333, GA_x5J8B7TQTH0-2-774, Olfr1332-ps1, Olfr1331, Olfr1330, Olfr1329, Olfr1519, Lao1, LOC666703, OTTMUSG00000008833, Slc2a1, Zfp691, Ermap, Ccdc23, 4930538K18Rik, AU022252, Lepre1, Cldn19, Ybx1, Ppih, 1700041C02Rik, Ldha-ps2, LOC100041471, Ppcs, Zmynd12, BC057371
Downstream geneLOC666766, LOC384052, AA415398, Foxj3, Guca2a, Guca2b, Hivep3, Edn2, Foxo6, Scmh1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-398B23.T7 (MSMg01no398_b23.b1)MSMg01-398B23.TJ (MSMg01no398_b23.g1)
ACCAG498301AG498302
length757761
length of high quality
(start - end)
491 (69 - 559)454 (80 - 533)
definitionCHROMAT_FILE: MSMg01no398_b23.b1 PHD_FILE: MSMg01no398_b23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:46 2005CHROMAT_FILE: MSMg01no398_b23.g1 PHD_FILE: MSMg01no398_b23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAGAATCCGCG
GAATTCAGAAATTTACACAAACTGCCCTGACCTTGTTGATAGCTATGACG
TTAATAGCTGACCCATAAGTTCAAAATGTACTATTGCTTTGCTGACCAAA
TCATAATACTCACCATGGGGGCAGGCCAAGTGAGTCACTAGGCCAGAGGT
AGTCACTACTGGCCTATGTGCCAAGAGGGGTTCTCCAACATGTTGGATCA
ATACAAATCCTTATGCAGTTTGCAGCGATGGCAGTCTCTGTGGTCTTTGT
GAGTGAGGGTCTTTTGACTTTTTCCAACACTGACAAGATTGAAATTGCCT
CAAGGAACTACTTCTAAACCACATACAGCAGAGCTGAACTGAACTGATAT
CCTGACAATACAGATTGGATTTGCTCCAAAGTCCACCTCCCCCATAACCT
AATAACCTTTCTTGTCCACTACCTCTAGAAGTTAAGGCAGGCAGTGGTGA
CGCACACCTTTAATCCCAGCACTTGGGAGGCAGAGACAGGTGGATTTCTG
AGGTCCAGGCCAACCTGGTCTAAGAGTGAGTTCCAGGACAGCCTAGGCTA
TACAGATAAACCCTGTCTCACAACAAACTAACCAACAAACAAACAAACCC
CAACCCCTAAAACCCACAACAACCAACAAAGGACCCTTTATTAAAAGTAG
GTTTTTGAAAAACAAAGCTGAGGCCTGGAGAAATGCGTCAATGCTTATAA
ACACTGG
NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTCACGTTGTAAAGAGGAAG
CCATGCTTGACTTTCCACAGAACACAACAATCCAATGTTAAAATTCATCC
TGAAGCAAAAAACAAGGCAGCTGGAAGATCTGGGAACACCTGAAAGGGGT
TGCCTCTCCAGGATCCACTTCCTAGACTGAGGTGGCGTGATGCTGGCATA
GAGCCAGATAAACTGGTGGGTGAGAGAAAAAAAGGACCTCAGAAAACCGT
CTCTGAATGTTTGCAGCACTTCATATTCTCCATTAAAAATATGGAGGAAA
GGGCCAGGCATGGTGTCGCACTCCTTGAATCCCAGCGGGGGCAGGTGGAT
CTTTGTGAGTTTGAGGCCTGGCCTACATAGAAAGTTCCAGAACAGCCAGG
ACTACATAAAGAAACCCTGTCTTAAAAATAAAAAATAAAAATAAAGATAA
ATAAAATATAGGCGGAAGAACAAAGTATTCAGTAAATAAGTGCGAAAATT
GATTACAGCAGGAGACCGTCTTTGGGGTGCTCTCTGAAGGGTTCATAGAA
GGAAATACCGTGACCCTGCATCCCTGTTTCTCTCGAATTCTGGAGTTTGA
AAGGCTGACCCCTAAATACCAACCTCTGGTCCAGGCACCTCGGTTCCTTA
ATTCCTGGTAACTATTTGTCAGTTTCTTATGTCCCTTGACCCCAATTTTT
TTTCTTATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no398_b23.g1 MSMg01no398_b23.g1 CHROMAT_FILE:
MSMg01no398_b23.g1 PHD_FILE: MSMg01no398_b23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:46 2005
         (454 letters)



>mm_chr4_119189782_119190635
          Length = 854

 Score =  808 bits (418), Expect = 0.0
 Identities = 445/454 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtcacgttgtaaagaggaagccatgcttgactttccacagaacacaacaatccaatgtt 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 473 agtcacgttgtaaagaggaagccatgcttgactttccacagaacgcaacaatccaatgtt 414

                                                                       
Query: 61  aaaattcatcctgaagcaaaaaacaaggcagctggaagatctgggaacacctgaaagggg 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 413 aaaattcatcctgaagcaaaaaacaaggcagctggaagatctgggaacacctgaaaaggg 354

                                                                       
Query: 121 ttgcctctccaggatccacttcctagactgaggtggcgtgatgctggcatagagccagat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 ttgcctctccaggatccacttcctagactgaggtggcgtgatgctggcatagagccagat 294

                                                                       
Query: 181 aaactggtgggtgagagaaaaaaaggacctcagaaaaccgtctctgaatgtttgcagcac 240
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 293 aaactggtgggtgagagaaaaaaaggaccccagaaaaccgtctctgaatgtttgcagcac 234

                                                                       
Query: 241 ttcatattctccattaaaaatatggaggaaagggccaggcatggtgtcgcactccttgaa 300
           |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 ttcagattcaccattaaaaatatggaggaaagggccaggcatggtgtcgcactccttgaa 174

                                                                       
Query: 301 tcccagcgggggcaggtggatctttgtgagtttgaggcctggcctacatagaaagttcca 360
           ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct: 173 tcccagcgggggcaggtggatctctgtgagtttgaggcctggtctacatagaaagttcca 114

                                                                       
Query: 361 gaacagccaggactacataaagaaaccctgtcttaaaaataaaaaataaaaataaagata 420
           ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 113 gaacagccaggactacataaagaaaccctgtcttaaaaataaaaagtaaagataaagata 54

                                             
Query: 421 aataaaatataggcggaagaacaaagtattcagt 454
           ||||||||||||||||||||||||||||||||||
Sbjct: 53  aataaaatataggcggaagaacaaagtattcagt 20


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 854
Length adjustment: 10
Effective length of query: 444
Effective length of database: 844
Effective search space:   374736
Effective search space used:   374736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)