BAC Information

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BAC

Clone NameMSMg01-398E23
Chromosome4 (Build37)
Map Location 138,347,027 - 138,539,948
singlet/doubletdoublet
Overlap genePla2g5, Pla2g2a, Pla2g2e, Otud3, Rnf186, Tmco4
Upstream geneAkp2, Ece1, LOC100040558, Eif4g3, Hp1bp3, Kif17, Ddost, Pink1, Cda, LOC625638, LOC625646, 0610009K11Rik, Camk2n1, LOC100040618, 4931403E03Rik, Ubxd3, Pla2g2c, Pla2g2f, Pla2g2d
Downstream geneHtr6, LOC665683, Nbl1, 2310028O11Rik, Hspe1-ps4, 9530077C14Rik, Capzb, Pqlc2, LOC100042808, Akr7a5, LOC625977, LOC626000, Mrto4, C230096C10Rik, Zubr1, C79267, Aldh4a1, Tas1r2, Pax7, Gm1667, Klhdc7a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-398E23.T7 (MSMg01no398_e23.b1)MSMg01-398E23.TJ (MSMg01no398_e23.g1)
ACCAG498441AG498442
length766759
length of high quality
(start - end)		540 (49 - 588)241 (78 - 318)
definitionCHROMAT_FILE: MSMg01no398_e23.b1 PHD_FILE: MSMg01no398_e23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:00 2005CHROMAT_FILE: MSMg01no398_e23.g1 PHD_FILE: MSMg01no398_e23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(138,347,027 - 138,347,562)(138,539,708 - 138,539,948)
sequence
NCCTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCTGAACTTTCTCCCTCCACCTCCCATGTGCTGAGATTTTTAA
GCATATCCCATCATGCCTGCCTTCCCAGCACTTTCTGTAGGCTTTATTTT
ATTTTAAGTTTCGTAAATGGCCCAGATGTGTCTTGAACTTGGGATCCTCC
TGTCTCAGCCTTGCTAATAACTGGGATCATAATTGCATACCAGCGTGCTG
AGTTCAAGAAGCTGCAGTGTGTGCGGGCGTGTGTGCGGTGTTATGTTGCT
ATGTGTATGTATGTGATGGATGTGTGTGAGTGTGCAGACATAAGAGGCCA
GAGGTCAGTGTTGAGTGTCCTCCTTGCTTGCTCTCCACCTTATCTTTGGA
GACACAGTTTGTTACTGACAGTCTGGAGCTCACCTTTACGACTAGGCTGA
TTGGCTGGCAAGCCTCAAAGATGCTCCCATCTCTGCCCCCTTGATGTTGG
GATAACAGACACTACTGTGTTCACCTCCTTACGTGGCTGTCTGGATTCCA
ACTCTGGTTTTCCTGCATGGCAGGCACTTTGCCAACCGAGACGCCTCAGC
CTCAGAAGCTGAACTTCAAACAGTTGGTGACTGGAGATTTGGGCGTGCCT
GGGCTGTGCTCCCCCCTCTGAAAAAAAACTTTTCCCCCAAGAATCCTGCC
TTAGCCAGGAATAATTCTTCCTTTCTTCCCCTGAAAACCTATCCCTTGAG
AACCCACCCCTTCCCG

NNCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCATTAGGAGGATGTAGAGACACA
TAAAGGTCTTTTCTTAGGTCTCAAGTCAGCCATAAGTATCCATCCCACCA
CAAACTAACCAGCTAGTGATTTAAGACGCTTGTATTGGTGCTTGCTGGCT
AGCAGACACCAGGCTGTCTGGTGGGGACGTAGAGGTGACCATGCCATGAC
AGAGAGAGACAATGGCTCCCCTCATGGGGACTGTAGATAGAGACAGACAG
ACAATGCCAAGGATTTGCATCTTTTGAAACCCCAGTGGTCCTTACCCAAT
TCTGGAGAACCAACGTGGGCGTCCCTCTCTGTGAGTCCAAGGACAGGCTG
TAAAGCTTCAGAGAGTTCTTCAAGGAAATATGCAAATTGCTCTACAGACT
AAACCAGAAAAACCAGCCATGGGTCCAGAGGGTGTGGAACCTGGAGCAGG
CGAAGAAGGGGCAGTCAGCCTGAGCTATGCCCCTTCACTCACTCAGGAGC
CTGTCCCAGCAGAGCAGCAGCCAGCCCCCACTTAATGGTCCCCGAGTGCC
AGGCAGAGCTCTATCCCGCTCACAGCCGTCTTTGCGCTTTGGCTTGGTAT
TATCTCGGGCCCCTGGCCAAACTTCGCGCTCCCAGCCCACAATTCTCCTC
TCTGTTTTGCACCTCCCTTTCCGCTCCTGGTCATAACCCCTTTCCTAACA
ATTTTCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no398_e23.b1 MSMg01no398_e23.b1 CHROMAT_FILE:
MSMg01no398_e23.b1 PHD_FILE: MSMg01no398_e23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:11:00 2005
         (540 letters)



>mm_chr4_138346823_138347762
          Length = 940

 Score = 1036 bits (536), Expect = 0.0
 Identities = 536/536 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctgaactttctccctccacctcccatgtgctgagatttttaagcatatcccatc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctgaactttctccctccacctcccatgtgctgagatttttaagcatatcccatc 264

                                                                       
Query: 65  atgcctgccttcccagcactttctgtaggctttattttattttaagtttcgtaaatggcc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atgcctgccttcccagcactttctgtaggctttattttattttaagtttcgtaaatggcc 324

                                                                       
Query: 125 cagatgtgtcttgaacttgggatcctcctgtctcagccttgctaataactgggatcataa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cagatgtgtcttgaacttgggatcctcctgtctcagccttgctaataactgggatcataa 384

                                                                       
Query: 185 ttgcataccagcgtgctgagttcaagaagctgcagtgtgtgcgggcgtgtgtgcggtgtt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttgcataccagcgtgctgagttcaagaagctgcagtgtgtgcgggcgtgtgtgcggtgtt 444

                                                                       
Query: 245 atgttgctatgtgtatgtatgtgatggatgtgtgtgagtgtgcagacataagaggccaga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atgttgctatgtgtatgtatgtgatggatgtgtgtgagtgtgcagacataagaggccaga 504

                                                                       
Query: 305 ggtcagtgttgagtgtcctccttgcttgctctccaccttatctttggagacacagtttgt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ggtcagtgttgagtgtcctccttgcttgctctccaccttatctttggagacacagtttgt 564

                                                                       
Query: 365 tactgacagtctggagctcacctttacgactaggctgattggctggcaagcctcaaagat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tactgacagtctggagctcacctttacgactaggctgattggctggcaagcctcaaagat 624

                                                                       
Query: 425 gctcccatctctgcccccttgatgttgggataacagacactactgtgttcacctccttac 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gctcccatctctgcccccttgatgttgggataacagacactactgtgttcacctccttac 684

                                                                   
Query: 485 gtggctgtctggattccaactctggttttcctgcatggcaggcactttgccaaccg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gtggctgtctggattccaactctggttttcctgcatggcaggcactttgccaaccg 740


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space:   492900
Effective search space used:   492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no398_e23.g1 MSMg01no398_e23.g1 CHROMAT_FILE:
MSMg01no398_e23.g1 PHD_FILE: MSMg01no398_e23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:11:00 2005
         (241 letters)



>mm_chr4_138539508_138540148
          Length = 641

 Score =  466 bits (241), Expect = e-136
 Identities = 241/241 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cattaggaggatgtagagacacataaaggtcttttcttaggtctcaagtcagccataagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cattaggaggatgtagagacacataaaggtcttttcttaggtctcaagtcagccataagt 382

                                                                       
Query: 61  atccatcccaccacaaactaaccagctagtgatttaagacgcttgtattggtgcttgctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atccatcccaccacaaactaaccagctagtgatttaagacgcttgtattggtgcttgctg 322

                                                                       
Query: 121 gctagcagacaccaggctgtctggtggggacgtagaggtgaccatgccatgacagagaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctagcagacaccaggctgtctggtggggacgtagaggtgaccatgccatgacagagaga 262

                                                                       
Query: 181 gacaatggctcccctcatggggactgtagatagagacagacagacaatgccaaggatttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gacaatggctcccctcatggggactgtagatagagacagacagacaatgccaaggatttg 202

            
Query: 241 c 241
           |
Sbjct: 201 c 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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