BAC Information

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BAC

Clone NameMSMg01-398G24
Chromosome4 (Build37)
Map Location 15,085,300 - 15,085,703
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC625831, LOC433687, LOC100040030, LOC433688, Slc26a7, 1700034K16Rik, Otud6b, LOC100040047, Tmem55a, OTTMUSG00000004551, Efcbp1
Downstream geneTmem64, LOC100040095, LOC633695, Calb1, Decr1, Nbn, Osgin2, Ripk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-398G24.T7 (MSMg01no398_g24.b1)MSMg01-398G24.TJ (MSMg01no398_g24.g1)
ACCAG498539AG498540
length758761
length of high quality
(start - end)
541 (50 - 590)406 (81 - 486)
definitionCHROMAT_FILE: MSMg01no398_g24.b1 PHD_FILE: MSMg01no398_g24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:10 2005CHROMAT_FILE: MSMg01no398_g24.g1 PHD_FILE: MSMg01no398_g24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTTTTTTTTCTTTTTAGCTCTGTACTGGTTGCACCCATTTT
TAAATTGGGTTATTTGGTTTTCTTGAGTCTAACGTCTTGAGTTCTTTGTC
TATATTGGATATTAGCCCTGTATTAGATGTACAGTTGGTAAAGATCTTTT
CCCAGTTTGTTGGTTGCCGTTTTGTCCTATTGACAGTGTTCTTAGCCTTA
TAGAACTTTTCAGTTTTATGAGGCCCCATTTATCAATTGTTGATCCTAGA
GCCTGAGCCATTAGTGTTCTGTTAAGGAAAAATTTCCTGTGCCAACGATG
TGTTCAAGGCTTTTTCTCACTTTCTCTTCTATTAGATTCAGTGTATTTTA
GTTTCTCTATCTATGATGATTGAGAGTTTTGCTGGAATAGTAGCCTGGAC
TGGCATTTGTATTCTCTTATGGCCTGCATGATATTTGTCCAAGATCTTCT
GGTTTTTAGAGTCACTGTTAAGAAGTCTGGTGTAATTCTGATAGGTCTGT
TTTTATATGCAACATGACCGTTTTCCCTTACAGCTTTTGATAATCTCTCG
TTGTTACTTGTATTTAGNGGTTTCATTATTATGTGACAGGAAGAATTTCT
TTTTCCATCTATTTTGTGTTCTGTGGGCTTCCTTGTATGTTATGGCCATC
TCTATCTTTATGTTAAAAAAATTTCTTTTTGTATTTTTGTTGAAAAAGTT
TTCTGCCC
NNNNCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAAGAAAACTTTTGCAACT
GATTAGATAAGAGTGAAGATAGGACAGAAGAAATAGTCTAAGACTATTCC
TGGTTTCTTTTGAATAAATTAGGAAGGGTGATATTCTTCAACAAAATATG
CAATATAGTACAATTAAGAGGAATAATGATATTTTTAGATGTTCACAGTT
CAAAATGTTTAAGAAACATCCATAAGGAGATGTGTAGCAGCCAGACAAAA
ATAAAAATCTATAATCATCAGCCTAGTGATTCATGGAAGTTGTGGGGTTG
GGTGAAACCAGCATATGGAAAAGAGTAATAATAAGAGGTGTGGTAGTGTG
TTTAGGAATGGCCTCTACACACTGTGTTTCAAATCTTGGCCATAGGGAGT
GGCATTATTAGGAGATACAGTCTTGTTGGAATAGGTATGGCCTTGTTGAT
GAAGTGGGTCACTGTGGGGATGTCTTTGAAATGTCTATGCTGCCGCTACC
TCTTTTTTGACCCAGAGTTTTTTTCAGTTGGCCGGGCAATCACAAAAACT
ATTTTCGAGGTCCTTCTTCAGTCCTGGGTGTCGGTATTCGTAATTTTCTT
TCTTCCTGTTGTAGAGTACCTACCTTCTGGATCCTACCCCTTTTTCCTTG
ATATTATCTTTTCTTTTTATATTCGTTATACTCTGGTTATTTCTTCTTTT
TATGATACCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no398_g24.g1 MSMg01no398_g24.g1 CHROMAT_FILE:
MSMg01no398_g24.g1 PHD_FILE: MSMg01no398_g24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:11:10 2005
         (406 letters)



>mm_chr4_15085198_15086001
          Length = 804

 Score =  758 bits (392), Expect = 0.0
 Identities = 402/406 (99%), Gaps = 2/406 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaagaaaacttttgcaactgattagataagagtgaagataggacagaagaaatagtcta 60
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 caaagaaaactcttgcaactgattagataagagtgaagataggacagaagaaatagtcta 447

                                                                       
Query: 61  agactattcctggtttcttttgaataaattaggaagggtgatattcttcaacaaaatatg 120
           ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 agac--ttcctggtttcttttgaataaattaggaagggtgatattcttcaacaaaatatg 389

                                                                       
Query: 121 caatatagtacaattaagaggaataatgatatttttagatgttcacagttcaaaatgttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 caatatagtacaattaagaggaataatgatatttttagatgttcacagttcaaaatgttt 329

                                                                       
Query: 181 aagaaacatccataaggagatgtgtagcagccagacaaaaataaaaatctataatcatca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 aagaaacatccataaggagatgtgtagcagccagacaaaaataaaaatctataatcatca 269

                                                                       
Query: 241 gcctagtgattcatggaagttgtggggttgggtgaaaccagcatatggaaaagagtaata 300
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 gcccagtgattcatggaagttgtggggttgggtgaaaccagcatatggaaaagagtaata 209

                                                                       
Query: 301 ataagaggtgtggtagtgtgtttaggaatggcctctacacactgtgtttcaaatcttggc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 ataagaggtgtggtagtgtgtttaggaatggcctctacacactgtgtttcaaatcttggc 149

                                                         
Query: 361 catagggagtggcattattaggagatacagtcttgttggaataggt 406
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148 catagggagtggcattattaggagatacagtcttgttggaataggt 103


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 406
Length of database: 804
Length adjustment: 9
Effective length of query: 397
Effective length of database: 795
Effective search space:   315615
Effective search space used:   315615
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)