BAC Information

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BAC

Clone NameMSMg01-398L12
Chromosome4 (Build37)
Map Location 127,124,930 - 127,125,153
singlet/doubletsinglet
Overlap genenone
Upstream geneEif2c1, LOC100039351, Eif2c4, Clspn, LOC665197, 5730409E04Rik, LOC620877, Psmb2, Tcfap2e, Ncdn, AU040320, Sfpq, Zmym1, LOC665245, Zmym6, LOC100039968, LOC621588, Dlgap3, BC003266, Gja4, Gjb3, Gjb4, Gjb5, LOC667296
Downstream geneLOC635169, 4930465A12Rik, Hmgb4, 4930546G22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-398L12.T7 (MSMg01no398_l12.b1)MSMg01-398L12.TJ (MSMg01no398_l12.g1)
ACCAG498755AG498756
length794782
length of high quality
(start - end)
35 (133 - 167)227 (88 - 314)
definitionCHROMAT_FILE: MSMg01no398_l12.b1 PHD_FILE: MSMg01no398_l12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:32 2005CHROMAT_FILE: MSMg01no398_l12.g1 PHD_FILE: MSMg01no398_l12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATATTTCGCTTCGTCTAAAGAGGACTATTCAAAACAAGGCGNGGAANNA
NNGATTTTCTGAAAACAAGGACGAAGGACAGCGACCGAGGAATGCTCTGG
ACAGGACACAGCTTTACTCGTGAAGGTACTGGCCCTCTGGGAGCAGGTCT
GCTGACTCCGGTGGGTTCTTCCACCCAAAAGAGACCTTAGGCTGCACCGT
AAGGCTCTGGTTGCTCATTATCCCTGTGTTCTCTGGGGTGAATTTTCAGT
TAGTCGACAGGCCTCTAGGCACCGCCTCTTCCTTCTCCTAGTTTTATCAC
AACGCACACGTTTTTTTTTTTTGCCCACCGTCTGGGACCACCAGGTTTCC
CAGTCAGAGATGAGATGCCCTTGACTTTATCTGCAGTCTTTTTCTGTACC
CCCCTGCACACTCCGTTAGGCAGGCTTTCGACCCGCGTATTCCGGTAATG
GTATCCTCATCTCGTTCCAACAACTCTTCCCCCTATTACCCATCCGGCCT
GGCTTGACTCCGGCTCAATTTCTTTCTATATTTGCCTTGCCTTTTGCGCT
TCTCTGGTCTTTCTTTACCCTTCCCGCGTGGCTACTTGTCTCCCATCCTC
CCTTTTTCATCCCTTTTCTCCCTCGCCTTTCATGCCTTTTTTTTAATCTC
TCCACGTTTTTATTCTTCTTTCCCTCACCTTATCGAAGCTCCCCCATCTT
TTGTTTCTTCCCCTCTCTTTCCTTCTCAGCTTTATATCCCTTCCCCCCCC
TGTTGACCGATATATTTTCCCCTTTTTCCCCCCCCCGCCCGCCC
AATGCAGTGGGAGGCCTGGNGGNCGCCTGGGTGCAACAATTTAGGNGAAC
TATAGAAGTACCAGCGACAATCCTACTGCTGGTGGNTTAATCACTCACCT
GAAGGGTACTGGTTAACTCCCAAGCAGTTTTCAACTGGCGAAGTTCTTCG
CAACCATTGTGACATTACAGAGAGAAGTTTCTTTGGTTTTTCATGAGGAG
ATGGGCTCTTATTTCCATGGATAAGTGCCAAAGTCTGACTTCCGATTTTA
CAGTTACTGCCAACTATTTTCTACTAATCCCCCTAGCTCACATTTCATTG
GAAGTTTAAGATTGTTTTCTGCTGCCCGTGCCTTTGACAATATTTGAAGT
CATTTCTGGGGTTTTTGTCCTAGCAAATTGTGATCGGTATATAAAGATGG
ACCATCCTGCCCACCAGTGGCCTGACTCTGATGCTGTCCCTCTTGCCATG
AGCACAGAGGCCATCTGACGGTGAAGCATCCATTTAAGTCTTTTGCTCCA
TGTTCCAACTGGGCGATTCGATATGGCTTTCCTTTACTGCTGAGTTCTGC
GTTTTTCCTAGGCGATCCAGATACTCTTTCCTTGCTCTGCTTATTGCCTT
GAATTTATTTTCCCCTATTCTTGTATTGAGTCCTGGCGCCCAGTTTTTTT
TTTTCTTTGTATTACGGTGTCTCTACTTTCTTCTTTTTAAACTATATTCT
TTACTTTCTTGCCTGCACCTCATTTTATCCTTTTGTTACTCTCCCTATCT
CTTCTCCCTTTCTTCCCTACCTCGCTCCTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no398_l12.g1 MSMg01no398_l12.g1 CHROMAT_FILE:
MSMg01no398_l12.g1 PHD_FILE: MSMg01no398_l12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:11:32 2005
         (227 letters)



>mm_chr4_127124730_127125356
          Length = 627

 Score =  387 bits (200), Expect = e-112
 Identities = 218/224 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   taatcactcacctgaagggtactggttaactcccaagcagttttcaactggcgaagttct 60
           ||||||||||||||||| |||||||  |||||||||||||||||||||||||||||||||
Sbjct: 424 taatcactcacctgaagagtactgggcaactcccaagcagttttcaactggcgaagttct 365

                                                                       
Query: 61  tcgcaaccattgtgacattacagagagaagtttctttggtttttcatgaggagatgggct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 tcgcaaccattgtgacattacagagagaagtttctttggtttttcatgaggagatgggct 305

                                                                       
Query: 121 cttatttccatggataagtgccaaagtctgacttccgattttacagttactgccaactat 180
           ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| 
Sbjct: 304 cttatttccatggataagtgccaaagtctgactcccgactttacagttactgccaactaa 245

                                                       
Query: 181 tttctactaatccccctagctcacatttcattggaagtttaaga 224
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 tttctactaatccccctagctcacatttcattggaagtttaaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 227
Length of database: 627
Length adjustment: 9
Effective length of query: 218
Effective length of database: 618
Effective search space:   134724
Effective search space used:   134724
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)