BAC Information

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BAC

Clone NameMSMg01-399L05
Chromosome4 (Build37)
Map Location 73,597,097 - 73,597,438
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667713, LOC100039698, OTTMUSG00000001246, LOC100039726, LOC667722, LOC623115, OTTMUSG00000000281, OTTMUSG00000000280, OTTMUSG00000000282, OTTMUSG00000000283, Gm428, Rasef, LOC667768, LOC545637, LOC623272, OTTMUSG00000014862, OTTMUSG00000004010, 2310002L09Rik
Downstream geneFrmd3, LOC100039774, Jmjd2c, LOC100040258, LOC100039814
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-399L05.T7 (MSMg01no399_l05.b1)MSMg01-399L05.TJ (MSMg01no399_l05.g1)
ACCAG499501AG499502
length735762
length of high quality
(start - end)
346 (71 - 416)310 (82 - 391)
definitionCHROMAT_FILE: MSMg01no399_l05.b1 PHD_FILE: MSMg01no399_l05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:47 2005CHROMAT_FILE: MSMg01no399_l05.g1 PHD_FILE: MSMg01no399_l05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAACGATCCGCGGA
ATTCCAAGTTTCACAATGGATTACCACTTATTAATTTTATGAATTTGTCT
AGGTCAATTTTCTCCATATCCTTTCCTTGTAAATTAATTGAAGAGTTGGC
ATCGTGATGGGAATAGAGATGAAGCATGCAAATCGCTTTGGTGAGAACAG
TCCAGTCCAGCATGCTTGCCCCAAGTGACTGCTCATTACCATCAGCAGTG
TTGCTCGTCCCAATCGAAACTTTCTATACACTTGCAACACACATCATTAT
CACTGAAAAATGTGAACTGCTTAACAAACCACTGCATGTTGAAGCCATAC
TATCAGAGCCAAGATATTATATTTTCAAATAAAAGATCTTATGAAAAATA
ATTGTGATTTACCGCCCAAACATTTTTTCATTTACAAAAGATTGTGGTTT
TACACTTATTTTTTAATTTGGGCCCCTAAACCCTGGCGTTTTATAACAGT
TATGTTTATTTCCCCTTTTTATTTCCCTGGGTCCTGAAAAAAAAAATAGA
TTTCTGCTCAAGCCCCGCGGTTCTTTTTTTTTCCTCCTTGTTTCTGGCAC
ATTTTTATTTTTCCTTTTTTTGATTTTCCTCTTGTTCTTTCTTTCCTTTG
CCGGGTCACTCTCTCTTTTCCCCCCCCCCCTTTTATTCCTTCTTTTCCGC
CCCCTCCCCCCCCTCTCATCCTTTCTTATTTTTCC
TCTCGCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTCATGAAGCAGAAAGGA
CATGGGAAAAGAAGAGAGATGAAGCCGAAATGTAAGTACAGTGCAATATA
TGAAATCCTTTTTTAAATTTTTTATTAGATATTTTCCTCATTTACATTTC
AAATACTATCCTGAAAGTCCCCTATACCCTCCCCCAACCCTGCTCCCCAA
CCCACACACTCCTGCTCCCTGGCCCTGGCATTCCCCTGTTCTGGGTCATA
TGATCTTTGCAAGACCAAAGGCCTTTCTTCCCATTGATGGCTGCCTAGGC
CATCCTCTGCTACATATGCAACTAGAGACACAGTTCTGGGGGCACTGCTA
TTAATAAGGGTTTAAATAAAGCTCACAACGGCTATAGCATATCCAGCAAT
GTCATTAGAAAAGTCATACTATTGATCTTCCAACTTTTCTCATTGCACTC
CCCGCTGCTCTGTGTTGATGTATCTTAATGCACATATTCCCTCATCTTTT
TCTCCCACTGTTATCATGTTACGTTTTTTTAAAATTCATCCGCTGACGGA
ACTACTGTCTCCTCCTGACACTTGTGGAACAGTTATCTTCCCTACCCCCA
TTAATAAATTTCAACATACTTGTCTCCATCCCCTCATAGTAATATTTCCT
TTAATTGTCTTCTTCACATTCTTTCGCATTTCCTGTCATCCTTCTCGTGA
CTTATTTTTCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no399_l05.b1 MSMg01no399_l05.b1 CHROMAT_FILE:
MSMg01no399_l05.b1 PHD_FILE: MSMg01no399_l05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:12:47 2005
         (346 letters)



>mm_chr4_73596897_73597642
          Length = 746

 Score =  654 bits (338), Expect = 0.0
 Identities = 341/342 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttaccacttattaattttatgaatttgtctaggtcaattttctccatatcctttccttgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 ttaccacttattaattttatgaatttgtctaggtcaattttctccatatcctttccttgt 483

                                                                       
Query: 61  aaattaattgaagagttggcatcgtgatgggaatagagatgaagcatgcaaatcgctttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 aaattaattgaagagttggcatcgtgatgggaatagagatgaagcatgcaaatcgctttg 423

                                                                       
Query: 121 gtgagaacagtccagtccagcatgcttgccccaagtgactgctcattaccatcagcagtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 gtgagaacagtccagtccagcatgcttgccccaagtgactgctcattaccatcagcagtg 363

                                                                       
Query: 181 ttgctcgtcccaatcgaaactttctatacacttgcaacacacatcattatcactgaaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 ttgctcgtcccaatcgaaactttctatacacttgcaacacacatcattatcactgaaaaa 303

                                                                       
Query: 241 tgtgaactgcttaacaaaccactgcatgttgaagccatactatcagagccaagatattat 300
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 tgtaaactgcttaacaaaccactgcatgttgaagccatactatcagagccaagatattat 243

                                                     
Query: 301 attttcaaataaaagatcttatgaaaaataattgtgatttac 342
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 attttcaaataaaagatcttatgaaaaataattgtgatttac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 746
Length adjustment: 9
Effective length of query: 337
Effective length of database: 737
Effective search space:   248369
Effective search space used:   248369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)