BAC Information

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BAC

Clone NameMSMg01-400O24
Chromosome4 (Build37)
Map Location 12,779,896 - 12,780,346
singlet/doubletsinglet
Overlap genenone
Upstream genePpm2c, Tmem67, C430048L16Rik, LOC230010, LOC623671, LOC100039958, Rbm12b, 6720467C03Rik, LOC545592
Downstream geneOTTMUSG00000004461, LOC100039988, Runx1t1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-400O24.T7 (MSMg01no400_o24.b1)MSMg01-400O24.TJ (MSMg01no400_o24.g1)
ACCAG500441AG500442
length1,030774
length of high quality
(start - end)		---451 (83 - 533)
definitionCHROMAT_FILE: MSMg01no400_o24.b1 PHD_FILE: MSMg01no400_o24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:14:25 2005CHROMAT_FILE: MSMg01no400_o24.g1 PHD_FILE: MSMg01no400_o24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:14:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATTGTTCTGTATTTTATTTTTTAAATAGTAACGGGGCGGGTAGGGGGGA
GGGCGGGAGCGGCGTAACTCTCGTCGCTGTCGCGCTGATGCGGATTCTTC
AATGTCGTGTATCGGCCGAGCTCTATCTCCTTTTATCCGGCACCCAGCAT
AGACGTTGGGTGTCACGCCGGTGCGCCTGCGAGCGCTCGCGCGCTGCAAT
GGTCTGGGCGTTGGTCGTGGGTCACGTGGCGCGTATGAATAGGTTGTAAT
ATCCTTCTCGCTCGCCACCCAGCGGCTGAGTCTCATCCCGCCTCGCTTCA
GAGTGACATGAGCGTTGCCTATATTATACGGACTAACTCTACTCGCTGCG
TATGTGACGTGGTCTATCGTGATGGCTCTGTATTATTAGTAGAGTTTAGC
TGTTCGTGATTACACGCTGACTTTGTGAGCCTGGTTGCGGCTGTTTGAGC
GCGCCCAGTGTCATTTTTGTTCCCTTCGATGCAATTTTCTAGGTATCGTC
TATTCCCGACTTCTACGTTGCACCGCGAACTCGGCCGGGGCGTTTACTCC
GTCCATGGCGTGCCTCCTCTTGTTGGTCCGTGTTGCGCGTCTGTGTGCTC
GCGGTGATGATGTGCTGGTCCCTGAGGCTCTGGGCTACGGTGTAGTCGCG
AGTGCCGAGATATGATTATTAGTGTGTCGCGCCTTATAGTAGGAACCGCT
CCCCTAGCTGGTGTTTAGGTTGCTCGGTCGCGTTTTATGGTGCTGGTCGT
GGTCGTGGTAGCATCGAAGTGTTAGGTGTTTGACGCGGTCTGATGTATTG
CTTTTGTGTGCCAACTCTGCTCCTAGTAGCGCTGTTCTTCCTGGTTGATG
CTCCCTGGGTTCGCTCCGTTTGCTGCTTGTACAACGTAACGCCAGTGTAG
TCAACTACGTCGTTTCGTGTCGGATGCGGCGCGATTCTCCTACTTCCTGC
CATGATTTCTCTCTGCGTGTTCGCTGCATACTACGTTCTTGTTTGACGCG
AGGATAGGTCGCACATCGACATGCCTCCTN

NTTTTTTCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAACATTGACACAAGCCCT
GAATTTATCTGGACATTTTAATAATTAATAATCAAGGAAAACACATGCAT
TATAGAAAAAAAAGCCATTCATTTTTGCTTTTTGTTTTAAATGTCTAATG
GGACTAATACATTTTACATGTCAAATATTGCCCTTAATAAATTCTTTCAA
AACAACACTATTAAAAAACATTTTGGTGCCTCATACAAGGGTTTTCAAAT
TTGTGTAAAAATGACTTAATTATACCAATTAAAACTTAATTATATGATTA
AAGCTTAATTATACCAATTTTATTACTAGTGTATATAAACTCAATAAATT
TGTAGACATTTTTCTCTCCTTGGAAAGATGAAATGTTATATATAGATTAC
ATTCAAAATATCAAAGTCATTTCTTTAAATACATTCACTTTTCAATCTGA
TATTTGAAGCATCACTAAGCCTTGAAAGATGAGGCTAAATGAATGTTCCT
TGATGAAACTGCTGAAGGGTTCTGCCAGAGTGATAAAACCAATTCCGTGT
TGCAAGAAAAAAAATTAGACATTCTTTATTAAATTGAACCGAAACTGGTA
ATCCCGAAAAAAAGAGCATGGATTTGAAATTTCAAAAACTTTCCAAATTG
CTTTTCCGAAACCCAAGTTTCCCAAGGAATTTGATTCTTTTTTCGAAACC
TTAAAAAAAACCGCGGGTGGGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no400_o24.g1 MSMg01no400_o24.g1 CHROMAT_FILE:
MSMg01no400_o24.g1 PHD_FILE: MSMg01no400_o24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:25 2005
         (451 letters)



>mm_chr4_12779696_12780546
          Length = 851

 Score =  833 bits (431), Expect = 0.0
 Identities = 446/451 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacattgacacaagccctgaatttatctggacattttaataattaataatcaaggaaaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 651 aacattgacacaagccctgaatttatctggacattttaataattaataatcaaggaaaat 592

                                                                       
Query: 61  acatgcattatagaaaaaaaagccattcatttttgctttttgttttaaatgtctaatggg 120
           ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 591 acatgcattatagaaaaaatagccactcatttttgctttttgttttaaatgtctaatggg 532

                                                                       
Query: 121 actaatacattttacatgtcaaatattgcccttaataaattctttcaaaacaacactatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 actaatacattttacatgtcaaatattgcccttaataaattctttcaaaacaacactatt 472

                                                                       
Query: 181 aaaaaacattttggtgcctcatacaagggttttcaaatttgtgtaaaaatgacttaatta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 aaaaaacattttggtgcctcatacaagggttttcaaatttgtgtaaaaatgacttaatta 412

                                                                       
Query: 241 taccaattaaaacttaattatatgattaaagcttaattataccaattttattactagtgt 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 411 taccaattaaaacttaattatatgattaaagcttaattataccaattttattactaatgt 352

                                                                       
Query: 301 atataaactcaataaatttgtagacatttttctctccttggaaagatgaaatgttatata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 351 atataaactcaataaatttgtagacatttttctctccttggaaagatgaaacgttatata 292

                                                                       
Query: 361 tagattacattcaaaatatcaaagtcatttctttaaatacattcacttttcaatctgata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 tagattacattcaaaatatcaaagtcatttctttaaatacattcacttttcaatctgata 232

                                          
Query: 421 tttgaagcatcactaagccttgaaagatgag 451
           |||||||||||||||||||||||||||||||
Sbjct: 231 tttgaagcatcactaagccttgaaagatgag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 851
Length adjustment: 10
Effective length of query: 441
Effective length of database: 841
Effective search space:   370881
Effective search space used:   370881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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