BAC Information

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BAC

Clone NameMSMg01-401A03
Chromosome4 (Build37)
Map Location 20,666,878 - 20,667,354
singlet/doubletsinglet
Overlap geneE130310K16Rik
Upstream geneSlc7a13, Atp6v0d2, LOC667282, Ttpa, LOC667301, EG664800
Downstream genePrdm13, Ccnc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-401A03.T7 (MSMg01no401_a03.b1)MSMg01-401A03.TJ (MSMg01no401_a03.g1)
ACCAG500495AG500496
length733734
length of high quality
(start - end)
274 (49 - 322)541 (84 - 624)
definitionCHROMAT_FILE: MSMg01no401_a03.b1 PHD_FILE: MSMg01no401_a03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:14:31 2005CHROMAT_FILE: MSMg01no401_a03.g1 PHD_FILE: MSMg01no401_a03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:14:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATC
CGCGGAATTCAAGGCCTTTCTCTAAACATGATAAAAGCAATCTACAGCAA
ACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCAC
TAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAAC
ATAGTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAA
GGGGATACTAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATG
ATATGATAGTATATATAAGTGTATCTANTTAATTCTACCAGAGAACTTCT
AAACCTGATAAGCAGCTTCGGTGAAGTAGCTGGATATAAAATAAACTCAA
ACAAGTCAGTGGCCTTTCTCTATACAAAGAATAAACAGGCTGAGAAAGAA
ATTAGGGAAACAACACCCTTCTCAATAGTCACAAATAGTATAAAATATCT
TGGCGTAACGCTAACTAAGGAGGTGAAAGATCTGTATGATAAAAACTTCA
AATCTCTGAAGAAAGAAATTAAAGAAGATCTCAGAAGACGGAAAGATCTC
CCATGCTCATGGATTGGCAGGATCAACATTGTAAAAATGGCTATCTTGCC
AAAAGCAATCTACAGATTCAATGCAATCCCCATCAAAATTTCCACTCAAT
TCTTCAACGAAATATAAGGAGCAATTTTGTAAA
NTTTCCTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCTTCCCAGAGGATCA
AAAATGTCCTGTAGTCAGACACTGTTGAACTGCCTCCTCATTTTTTAGAC
GTCAGCAATTCAATTTGTTTCTCCATTAGTTCAATACTGCTTCACTTTTT
TTTTTTTTTTTTACTATTTATTAGGGTATTGTTTATGTCCTAGAAAGTGA
TATTAAATGTTCAGGAGGTATGAGAGGAGGAACCTCTAGCCAGATGTGCA
AGTCATGTGTGAATTCTGCAATGTGCTTTGCAGATAAGAAATGAGAATGA
ATATAGGTAATGTACTCTTGGGTAAGGTAGGTTTCATGGTGTGGAGTAAG
AAGCTGAATAAGTTTAGAGTGAATGAAGAGTCAAGTCCAGGTGATGTCAA
GTTTGTGTCAAGCACATGTGACAGAACTGGTGGGAAGTGACAAAGACACC
AGAACTTAGGTCTATGCCTCTTCAGACACAGACTCTATAGTCCAGAAAGC
ACAGAAGTGACAAAGACACCAGAACTTAGGTCTATACCTCTTCAGACACA
GACTCTATAGTCCAGAAAGCACAGAAGTGACAAAGACCCCAGACCTTAAG
TCTATGCCTCTTCAGACACATACTCTATAGGCCAGAAAGCACAGAAAGCG
GTTTAGAACCTCAGTCCCCTCTGTTGATGGAGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no401_a03.g1 MSMg01no401_a03.g1 CHROMAT_FILE:
MSMg01no401_a03.g1 PHD_FILE: MSMg01no401_a03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:31 2005
         (541 letters)



>mm_chr4_20666538_20667478
          Length = 941

 Score =  899 bits (465), Expect = 0.0
 Identities = 473/477 (99%), Gaps = 3/477 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgcttcccagaggatcaaaaatgtcctgtagtcagacactgttgaactgcctcctcattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 tgcttcccagaggatcaaaaatgtcctgtagtcagacactgttgaactgcctcctcattt 758

                                                                       
Query: 61  tttagacgtcagcaattcaatttgtttctccattagttcaatactgcttcac---ttttt 117
           ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||
Sbjct: 757 tttagacgtcagcaattcaatttgtttctccattagttcaatactgcttcactttttttt 698

                                                                       
Query: 118 ttttttttttttactatttattagggtattgtttatgtcctagaaagtgatattaaatgt 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 ttttttttttttactatttattagggtattgtttatgtcctagaaagtgatattaaatgt 638

                                                                       
Query: 178 tcaggaggtatgagaggaggaacctctagccagatgtgcaagtcatgtgtgaattctgca 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 tcaggaggtatgagaggaggaacctctagccagatgtgcaagtcatgtgtgaattctgca 578

                                                                       
Query: 238 atgtgctttgcagataagaaatgagaatgaatataggtaatgtactcttgggtaaggtag 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 atgtgctttgcagataagaaatgagaatgaatataggtaatgtactcttgggtaaggtag 518

                                                                       
Query: 298 gtttcatggtgtggagtaagaagctgaataagtttagagtgaatgaagagtcaagtccag 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 gtttcatggtgtggagtaagaagctgaataagtttagagtgaatgaagagtcaagtccag 458

                                                                       
Query: 358 gtgatgtcaagtttgtgtcaagcacatgtgacagaactggtgggaagtgacaaagacacc 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 gtgatgtcaagtttgtgtcaagcacatgtgacagaactggtgggaagtgacaaagacacc 398

                                                                    
Query: 418 agaacttaggtctatgcctcttcagacacagactctatagtccagaaagcacagaag 474
           |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 397 agaacttaggtctatgcctcttcagacacatactctatagtccagaaagcacagaag 341


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space:   494361
Effective search space used:   494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)