BAC Information

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BAC

Clone NameMSMg01-401F14
Chromosome4 (Build37)
Map Location 54,774,305 - 54,986,791
singlet/doubletdoublet
Overlap geneLOC384018, EG666920, Zfp462
Upstream geneFcmd, Tal2, LOC435784, Tmem38b, LOC670124, LOC100041280, LOC666901, LOC100041303
Downstream geneLOC670211, Rad23b, LOC666953, LOC100041348, Klf4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-401F14.T7 (MSMg01no401_f14.b1)MSMg01-401F14.TJ (MSMg01no401_f14.g1)
ACCAG500756AG500757
length739740
length of high quality
(start - end)
219 (324 - 542)537 (80 - 616)
definitionCHROMAT_FILE: MSMg01no401_f14.b1 PHD_FILE: MSMg01no401_f14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:14:57 2005CHROMAT_FILE: MSMg01no401_f14.g1 PHD_FILE: MSMg01no401_f14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:14:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,774,305 - 54,774,523)(54,986,255 - 54,986,791)
sequence
NTTTCTATATTTGTTACGNNAAANGAGNCACTATTCCAATACCACCGNGG
AANCANAATATTTCGGAGACCAGTCTGGCCCTTCACATGAAAGTCCCACT
TGGGATTTCTCCTGTAATGAGAGGAATTCCCCATAGACCGCCTTGATTAC
TTTTTCCTGTGGAATCAGACAAGCCTCTTCAAAATCTCCATACACACATG
GCTCCACTGTGAGTGGCTTTAACATCTGAACTGGACTTCATCCGTCTCTA
GGAGCAAAGAGTGTAAATTAATGCCTCACATAGTGTTCATAACATTCATT
CATTTGCCAAGTCAACTTTTGTCCTGACTTCACCAAGCATGTGGTGACTG
CAGGGAGCAGACAGACTTGGCACAGGCCAGAGGTGGGTGTGGCAGCAGAT
TTTCCTACAGAGTAAAGAAATGCTTTGTTTTTAAAATGGGTTTTCAATTC
TTAGGATGTTTCCGAACTTTGAGAAGAACCGACCCTTGTGAAAGAATAAC
ATGATAAGAGCCTGGGGTCGCCTTCTCTTCCTGTCTCAATGCAGAGACAG
GAAGATGGCCTTGGTGGGTCTTATTAGAGACTTGCAATCAAATACAGTCT
CTGCATGAAATATGTCACATTTTAGCCTGACCTACACTGGAAGCAGCCTG
TATGTGTTCCACTCTGAGACCAGCCATATCCTCAGACGATATGAGGAAGT
TCAGCCCCACACCTAATTAAGGTCCACTATAATATACAT
TCCCGATGCTAGNGGNAGGNCAGGCGGNCGCCTGTTTCAACAATTTAGGN
GACCTATAGAATTTTCCGTGAAATTCAGNAGCTGGCTTATGAGAACACTC
CAGAGAAAGCAGGCAAACTAGACAGCGTGTAGGAATGGTCTCTAAGAAGA
TGGAAGGCAACAGGGAGCTGGGGAATCCTCAACAACAACGTACAAAGAGC
TCATCCTGTTAGCTGATAAAAAGCCCACGGTGAAGGCCATTACGGGTTCA
AACCACTACTTACCCTGGATAAGTCACAGGGACAAGCTATTCCCAATCAG
TTCCTGCTTCCTGATTAAATTTTTTTTTTCTCACTTTCAACCTCTGGAAG
TGGACTGTCTCCAAGAACATCAAGTGAGAAGGTGTTTAGCTAGGGAGTCA
ATCTGATTTTAAAAGGGACAACAACCGTGGGGACGTGCCACCTCCTGCCA
TTTATCTTCTCCCACCCACTCAGCCTTCTCTGCTTGATCTTTACTCCCTT
CCAACAAGCCCAGACAAAGCACAGAATCCTCCAAATGAAGCTCCAGGCAG
TCTCCACCAATCAATCAAAACTGGCATGAGCAATAGAAGCTCTCTGCCAA
CACAGTTGACGTGGAGTAAGCATGGATCACCAAGGCAGAAAAGTGCAATT
GCAGTTCCGGTTTCCCTGCCTGACTTTCCTACACTGTGGACTTTGGACCA
ATCACCTTTAAGCCTTTGCAGAGCTGTAAGCAAACTGAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no401_f14.b1 MSMg01no401_f14.b1 CHROMAT_FILE:
MSMg01no401_f14.b1 PHD_FILE: MSMg01no401_f14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:57 2005
         (219 letters)



>mm_chr4_54774105_54774723
          Length = 619

 Score =  424 bits (219), Expect = e-123
 Identities = 219/219 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgacttcaccaagcatgtggtgactgcagggagcagacagacttggcacaggccagagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgacttcaccaagcatgtggtgactgcagggagcagacagacttggcacaggccagagg 260

                                                                       
Query: 61  tgggtgtggcagcagattttcctacagagtaaagaaatgctttgtttttaaaatgggttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgggtgtggcagcagattttcctacagagtaaagaaatgctttgtttttaaaatgggttt 320

                                                                       
Query: 121 tcaattcttaggatgtttccgaactttgagaagaaccgacccttgtgaaagaataacatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcaattcttaggatgtttccgaactttgagaagaaccgacccttgtgaaagaataacatg 380

                                                  
Query: 181 ataagagcctggggtcgccttctcttcctgtctcaatgc 219
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ataagagcctggggtcgccttctcttcctgtctcaatgc 419


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 219
Length of database: 619
Length adjustment: 9
Effective length of query: 210
Effective length of database: 610
Effective search space:   128100
Effective search space used:   128100
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no401_f14.g1 MSMg01no401_f14.g1 CHROMAT_FILE:
MSMg01no401_f14.g1 PHD_FILE: MSMg01no401_f14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:57 2005
         (537 letters)



>mm_chr4_54986179_54987115
          Length = 937

 Score = 1000 bits (517), Expect = 0.0
 Identities = 532/537 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agctggcttatgagaacactccagagaaagcaggcaaactagacagcgtgtaggaatggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 agctggcttatgagaacactccagagaaagcaggcaaactagacagcgtgtaggaatggt 554

                                                                       
Query: 61  ctctaagaagatggaaggcaacagggagctggggaatcctcaacaacaacgtacaaagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 ctctaagaagatggaaggcaacagggagctggggaatcctcaacaacaacgtacaaagag 494

                                                                       
Query: 121 ctcatcctgttagctgataaaaagcccacggtgaaggccattacgggttcaaaccactac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 ctcatcctgttagctgataaaaagcccacggtgaaggccattacgggttcaaaccactac 434

                                                                       
Query: 181 ttaccctggataagtcacagggacaagctattcccaatcagttcctgcttcctgattaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 ttaccctggataagtcacagggacaagctattcccaatcagttcctgcttcctgattaaa 374

                                                                       
Query: 241 ttttttttttctcactttcaacctctggaagtggactgtctccaagaacatcaagtgaga 300
             ||   |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 cattcagtttctcactttcaacctctggaagtggactgtctccaagaacatcaagtgaga 314

                                                                       
Query: 301 aggtgtttagctagggagtcaatctgattttaaaagggacaacaaccgtggggacgtgcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 aggtgtttagctagggagtcaatctgattttaaaagggacaacaaccgtggggacgtgcc 254

                                                                       
Query: 361 acctcctgccatttatcttctcccacccactcagccttctctgcttgatctttactccct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 acctcctgccatttatcttctcccacccactcagccttctctgcttgatctttactccct 194

                                                                       
Query: 421 tccaacaagcccagacaaagcacagaatcctccaaatgaagctccaggcagtctccacca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 tccaacaagcccagacaaagcacagaatcctccaaatgaagctccaggcagtctccacca 134

                                                                    
Query: 481 atcaatcaaaactggcatgagcaatagaagctctctgccaacacagttgacgtggag 537
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 atcaatcaaaactggcatgagcaatagaagctctctgccaacacagttgacgtggag 77


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space:   488529
Effective search space used:   488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)