BAC Information

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BAC

Clone NameMSMg01-401G18
Chromosome4 (Build37)
Map Location 107,393,270 - 107,393,652
singlet/doubletsinglet
Overlap genenone
Upstream geneGm1027, BC026682, Acot11, Ssbp3, Mrpl37, 2810410C14Rik, Cdcp2, 2210012G02Rik, Tmem59, LOC546840, Lrrc42, 2900042B11Rik, Dio1, Yipf1, LOC652920, Tmem48, Glis1, Dmrtb1, LOC100039889
Downstream geneLOC433743, 4933424M12Rik, 4930430J20Rik, Magoh, 0610037L13Rik, Cpt2, Slc1a7, Podn, Scp2, Echdc2, Zyg11a, Zyg11b, LOC100040252, 2010305A19Rik, LOC545667, Gpx7, LOC665728, Zcchc11, LOC100040110, Prpf38a, Orc1l, Cc2d1b, Zfyve9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-401G18.T7 (MSMg01no401_g18.b1)MSMg01-401G18.TJ (MSMg01no401_g18.g1)
ACCAG500812AG500813
length781774
length of high quality
(start - end)
387 (72 - 458)246 (76 - 321)
definitionCHROMAT_FILE: MSMg01no401_g18.b1 PHD_FILE: MSMg01no401_g18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:02 2005CHROMAT_FILE: MSMg01no401_g18.g1 PHD_FILE: MSMg01no401_g18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NATCTATAATTTGCGGCGCTAAACGAATCCTAATTCAAACCATCCGCGGA
ATTCTACTCCTTTCTAAGATCTTTCTTTCTTACATTCACCAAAGGCTCAC
TGTTGCGTGAGACTTGGTCTACATGGAACCAGCCTTTGATCCTCTTGTCA
AACTTCACTGTCCCTACAGACCAAAGGAAGAAGAAAAGCTAAGGTCTACC
ACAAGACAGATGAATGCCAGAGCTGCCCACAAGATTACCTTCAAGGGGCC
ATGTCTCTCAACCCTCTCAACCAGAAGCATGGGGCAGAAACCTTGGGGGG
GGGGCAAGACCAGAAGATGTCTATACAAGGTACCTTTGAACTGGGAGGTG
GGGGGGGGCAGGCAGACCAGAGGCAGGGGAAGTGAGCAAAGAGTTACCCA
GAAACTTTAGTCTTAACCCTTTTCACCATTTTCTGCCAAGTGCCTGCCTC
CTTGCAGCCAGTGTGTGTTTATCAGCTTGTTGCAAATTACATGTTAAACA
CTCATCACCCTGGTTGAGGCAGTTACTGAGTCTCTTTGTTAGATTAATAA
TATTACCAGATCTGGGCAGACTCTCCAGTGTTTACCTCCTTTGCAAGGGT
CGGCTCCGTTCCTTGCTTTCCTCCATACTCATTCCCCATTCTCTCCTGCA
TCCTCTGCTTTTTGTTTTCTTCTTCCGCGCTTACACCTTTTCTTACAAAC
CTATGTTTTTTTATCTTCTTCCCTCCCTTCACACCTTACTCTTCTCCTCT
CATATTTCCCCCCCCCCCCCTCCTTCCTTTN
NCCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCTG
AGAAATGCCTGAAAAAATGTTCAGCATCCTTAATCATCAGGGAAATGCAA
ATCAAAACAACCCTGAGATTCCATCTCACACCAGTCAGAATGGCTAAGAT
AAAAAATTCAGGTGACAGCAGATGCTGGCAAGGATGAGGAGAAAGAGGAA
CACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAA
TCAGTTTGGCAGTTCCTCAGATTTTTGTTCATAGTACTACCGGAGGATTC
TGCAATACCTCTCCTGGGCATATATCCAGAAGATGTTCCAACTGGTAAGA
AGGACATATGCTCCACTATGTTCATAGCAGCCTTCTTTATAATAGCCAGA
AGCTGGAAAGAACCCAGATGTCCCTCAACAGAGGAATGGATACAGAAAAT
GTGGTACATTTACACAATGGAGTACTATTCAGCTATTAAAAATAATTCAT
GAAATTCCTAGGCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGG
TAACTCAATCACAAAGAACTCACATTGATATGTACTCACTGATAAATGGA
AATTAAGCCCCAATTTTATAATACCCCAGAACCAAATACCATTTTGCGAA
CCACTGAACTTCGGAAAAATGAAAAACACGGATGGGGCCCTTGCCCCCTC
TTAAAATGGGGGACAAAACACCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no401_g18.b1 MSMg01no401_g18.b1 CHROMAT_FILE:
MSMg01no401_g18.b1 PHD_FILE: MSMg01no401_g18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:02 2005
         (387 letters)



>mm_chr4_107393070_107393852
          Length = 783

 Score =  671 bits (347), Expect = 0.0
 Identities = 376/391 (96%), Gaps = 12/391 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttctttcttacattcaccaaaggctcactgttgcgtgagacttggtctacatggaacca 60
           |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 583 tttctttcttgcattcaccaaaggctcactgttgtgtgagacttggtctacatggaacca 524

                                                                       
Query: 61  gcctttgatcctcttgtcaaacttcactgtccctacagaccaaaggaagaagaaaagcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 gcctttgatcctcttgtcaaacttcactgtccctacagaccaaaggaagaagaaaagcta 464

                                                                       
Query: 121 aggtctaccacaagacagatgaatgccagagctgcccacaagattaccttcaaggggcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 aggtctaccacaagacagatgaatgccagagctgcccacaagattaccttcaaggggcca 404

                                                                       
Query: 181 tgtctctcaaccctctcaaccagaagcatggggcagaaaccttgg-ggggggg---gcaa 236
           ||||||||||||||||||||||||||||||||||||||||||||| |||||||   ||||
Sbjct: 403 tgtctctcaaccctctcaaccagaagcatggggcagaaaccttggagggggggcgggcaa 344

                                                                       
Query: 237 gaccagaagatgtctatacaaggtacctttgaactgggaggtgggggggggcaggcagac 296
           ||||||||||||      |||||||||||||||||||||||||||||||  |||| ||||
Sbjct: 343 gaccagaagatg------caaggtacctttgaactgggaggtggggggg--cagggagac 292

                                                                       
Query: 297 cagaggcaggggaagtgagcaaagagttacccagaaactttagtcttaacccttttcacc 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 cagaggcaggggaagtgagcaaagagttacccagaaactttagtcttaacccttttcacc 232

                                          
Query: 357 attttctgccaagtgcctgcctccttgcagc 387
           |||||||||||||||||||||||||||||||
Sbjct: 231 attttctgccaagtgcctgcctccttgcagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 783
Length adjustment: 9
Effective length of query: 378
Effective length of database: 774
Effective search space:   292572
Effective search space used:   292572
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)