BAC Information

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BAC

Clone NameMSMg01-401I19
Chromosome4 (Build37)
Map Location 43,724,833 - 43,901,910
singlet/doubletdoublet
Overlap geneLOC100039781, 5430416O09Rik, A630077J23Rik, GA_x5J8B7W5BNN-892919-892147, Olfr159, Olfr29-ps1, Olfr156, LOC100040268, Olfr155, Reck
Upstream geneLOC545614, 1700008B15Rik, Ccl19, Ccl21b, LOC100039205, LOC433698, BC049635, N28178, Dnajb5, 1700022I11Rik, Vcp, Fancg, Pigo, Stoml2, B230312A22Rik, Unc13b, 4930417M19Rik, Rusc2, 4833436C18Rik, Tesk1, Cd72, Sit1, Rmrp, LOC622404, E130306D19Rik, Car9, Tpm2, Tln1, Creb3, Gba2, 1110029E03Rik, LOC100039672, LOC100040179, Npr2, Spag8, Hint2, Serf2-ps, 4930412F15Rik, Olfr70, Olfr71
Downstream geneGlipr2, Ccin, Clta, Gne, LOC100040313, OTTMUSG00000007209, Rnf38, Melk, Pax5, 5730488B01Rik, LOC545618, Zcchc7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-401I19.T7 (MSMg01no401_i19.b1)MSMg01-401I19.TJ (MSMg01no401_i19.g1)
ACCAG500908AG500909
length752765
length of high quality
(start - end)		297 (329 - 625)245 (73 - 317)
definitionCHROMAT_FILE: MSMg01no401_i19.b1 PHD_FILE: MSMg01no401_i19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:12 2005CHROMAT_FILE: MSMg01no401_i19.g1 PHD_FILE: MSMg01no401_i19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:12 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,901,614 - 43,901,910)(43,724,833 - 43,725,077)
sequence
NCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGAATGCGCG
GAATTCACGCTGATCACATATATAGGAATTTAAAAAATACTGTTATCAGT
GTGGACCAGTGAAGGCAAAGCTGAGTTCAAGAAGGTACACACATCCTCTT
TCCAATTCAAGAAGGTACACACATCCTCTTTCCAGAGTTAGGTTGTACAA
TGAAGAATCTGGATGGCTTTGTTCTACCTCATGACAGGGAAGACTCCTTG
GAATTTCCTCAACAACAAGAGTGCCTCTGCTGTGATATGAAGTAATCCAA
CAGGATGGCTTCAGAATGGTTTTTTATTCAGGCCTGAAAGGTGAGCACTG
TAAGCAGGGAGTTGAGGACTGAGGCATTTATTAACTTGACCTCTCAATCT
TTGGTGGTGAGGAGGGGAATAGGGGCTGATTCAACCATTTGACCAAAAAT
TCAGTTAATCCTAGACAATGAAACCAAATAAAAACTCTGGCGCTTCCCTG
GCTGATGCCTACACTGATGTGCTGGGGAGATTTTACATATGTAAATGTAT
ATTGATTCTGCTGGGTCTGGTGGGATATACCTTACATCCCAACAGAAGCA
TATAGATCTCTGAATACAAGGCCAGCCGGGCCTACATAGTGAGCTCCTGG
CCAGTCTGGTTTATACAGTGAGGCCATGTTTTCAAAACAAAACTGCACAC
ATGCGAGCACACATGTACTCATTGCTGCATGCCTGGACATATTCTCTGAG
AN

NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTGTGTTTCCTCCTGCTGTTTTGTTTAGT
CCTATTTTGGGGAGGTGAGTTGACCAGCTCCCAGGCTCCCCCTGGTGGCC
ACCGAGCCAATGCTGATTTCTTTGAAAATGGAGTTGGAATCCCAGTAAAA
TCCTGGACTGGGGCACTCAGGCCCTGACAGATTAACTACTATGGCAGAAA
GAATTTTGAATCTAGGAACAAAATAGACATAAAAGCTGGGTATCCTTGGG
TGACTGTCCATATGGCCTCTGTTTGCTCTACTAGTCTCTCAATATTAGGA
AACCTCGAAGAAAGATGTATTTTCGATCCTCATCCAAAGAATCCAGCCTT
CCAGGAAGAGCTAAAAGGATGTAAAATAGTGTCTTCTAGAAATGTCATGG
CTGCTGTACTCATGAGCTTGCTGTGGTCGTTACCTGCTCAAGACCTGTGC
AAGATCAAGCCAACTAGATCAGTCAGCATTCCAGTGGAGAGAGGGGGGAG
GTGTGTCATNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTTTTTGT
TTTTTTTTCTNTGTTCNTTTTGGCTTTGATCCTTTCCTTCCTCTTCCCCC
TTCTCTTTTCTCTTTTTCTTCTTCCTTTTCCCCTCTTTTTCCCCCTTTTT
CTTTCCTGCTTTTCCTTTCTCCCCCTTTTCCCTCTTTCTTTTCTCGCCCT
TTTCTTTTTCCTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no401_i19.b1 MSMg01no401_i19.b1 CHROMAT_FILE:
MSMg01no401_i19.b1 PHD_FILE: MSMg01no401_i19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:12 2005
         (297 letters)



>mm_chr4_43901471_43902167
          Length = 697

 Score =  543 bits (281), Expect = e-159
 Identities = 293/297 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggcctgaaaggtgagcactgtaagcagggagttgaggactgaggcatttattaacttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 caggcctgaaaggtgagcactgtaagcagggagttgaggactgaggcatttattaacttg 381

                                                                       
Query: 61  acctctcaatctttggtggtgaggaggggaataggggctgattcaaccatttgaccaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 acctctcaatctttggtggtgaggaggggaataggggctgattcaaccatttgaccaaaa 321

                                                                       
Query: 121 attcagttaatcctagacaatgaaaccaaataaaaactctggcgcttccctggctgatgc 180
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 320 attcagttaatcctagacaatgaaaccaaataaaaactcttgcgcttccctggctgatgc 261

                                                                       
Query: 181 ctacactgatgtgctggggagattttacatatgtaaatgtatattgattctgctgggtct 240
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 260 ctacactgatgtgctggggagattttacatatggaaatgtatattgattctgctgggtct 201

                                                                    
Query: 241 ggtgggatataccttacatcccaacagaagcatatagatctctgaatacaaggccag 297
           | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 200 gatgggatataccttacattccaacagaagcatatagatctctgaatacaaggccag 144


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 697
Length adjustment: 9
Effective length of query: 288
Effective length of database: 688
Effective search space:   198144
Effective search space used:   198144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no401_i19.g1 MSMg01no401_i19.g1 CHROMAT_FILE:
MSMg01no401_i19.g1 PHD_FILE: MSMg01no401_i19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:12 2005
         (245 letters)



>mm_chr4_43724633_43725277
          Length = 645

 Score =  466 bits (241), Expect = e-136
 Identities = 244/245 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtgtttcctcctgctgttttgtttagtcctattttggggaggtgagttgaccagctccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtgtttcctcctgctgttttgtttagtcctattttggggaggtgagttgaccagctccc 260

                                                                       
Query: 61  aggctccccctggtggccaccgagccaatgctgatttctttgaaaatggagttggaatcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggctccccctggtggccaccgagccaatgctgatttctttgaaaatggagttggaatcc 320

                                                                       
Query: 121 cagtaaaatcctggactggggcactcaggccctgacagattaactactatggcagaaaga 180
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 321 cagtaaaatcctggactggggcactcaggccctgacagattaattactatggcagaaaga 380

                                                                       
Query: 181 attttgaatctaggaacaaaatagacataaaagctgggtatccttgggtgactgtccata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attttgaatctaggaacaaaatagacataaaagctgggtatccttgggtgactgtccata 440

                
Query: 241 tggcc 245
           |||||
Sbjct: 441 tggcc 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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