BAC Information

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BAC

Clone NameMSMg01-401J01
Chromosome4 (Build37)
Map Location 65,859,990 - 65,860,229
singlet/doubletsinglet
Overlap geneAstn2
Upstream genePappa, Trim32
Downstream geneLOC667499, Tlr4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-401J01.T7 (MSMg01no401_j01.b1)MSMg01-401J01.TJ (MSMg01no401_j01.g1)
ACCAG500920AG500921
length729723
length of high quality
(start - end)
284 (337 - 620)240 (84 - 323)
definitionCHROMAT_FILE: MSMg01no401_j01.b1 PHD_FILE: MSMg01no401_j01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:13 2005CHROMAT_FILE: MSMg01no401_j01.g1 PHD_FILE: MSMg01no401_j01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAAAAATATATCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAG
AGGATCCGCGGAATTCTCACCTTACGAATAAAGAATGGCAGAGAAGCACT
TGAAAAAATGTTCAACATCCTTAATCATCAGGCAAATGCAAATCAAAACA
ACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTC
AGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCC
ATTGTTGGTGGTAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGG
CGGTTCCTCAGAAAACTGGACATAGTACTATTTTAGGATCCAGCAATACC
TCTCCTGGGCATATATCCAGAAGATGCCCCAACAGGTAAGAAGGACACAT
GCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAA
GAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACAT
CTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAAT
TCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACA
CATTCACAAAGAAATTCACACAATATGCATTTACTGATAAGTGGATATTA
GCCCCAAACCTAGGATACCCTAGATATAACATATAATTTGCTAAACACAT
GATACTCAAGAAGAATGAACATTGAAGTG
CTTTTTTACCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCAGGTTAGATAAATA
ACCGGAGAGTCTTAGGACTAGGCCAGTTTGCAGATACTTTGTTCTCTTAA
GGAAATCTGAGAGGACTATAAGCAAAAAGTTGAATTTTTCCAGCAGAAAG
TACTTTTGCTTATTTTGCTTATCTTAATCCTATTTTTTTTCTGTGGAATT
TCTGCTCCTGTTTCCTTCCTAATGTTTTCTCCCTACAATGCCCGCACCAT
TTGATCCTCTGCTAAGCATAGACACTTATTTTATAAATAATAATGATAAT
AATAATAAAAGAATACCTTATTACCATCTTCTCTTGGCAATTTTCTTTTC
TGCTTTATTTTATTTTATTTTTGCTTTTTATATTATGATTTCTTACAAGA
CTGCTAGATTTGAATAATGGACACAATAGTCCTTTCTCTGCAAAACAGAT
TAAATTGTGTGCTACCCAGCATTCATATCCATTCCACCATCAGGATTGGA
AACAGACATTTGTAGATGTCAATGGTTAAGCATATCAACTTANAGTTATC
ATTGACTCCATGTCAGACTTGAATCAATTAACACTATTATTTTAAGAATA
GAGGGGCATCTGGGTTCTTTCCAGCTTCTGGCTATTATAAATAAGACTGC
TATGAACATAGTGGAGCATGTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no401_j01.g1 MSMg01no401_j01.g1 CHROMAT_FILE:
MSMg01no401_j01.g1 PHD_FILE: MSMg01no401_j01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:13 2005
         (240 letters)



>mm_chr4_65859790_65860429
          Length = 640

 Score =  464 bits (240), Expect = e-135
 Identities = 240/240 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgcaggttagataaataaccggagagtcttaggactaggccagtttgcagatactttgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tgcaggttagataaataaccggagagtcttaggactaggccagtttgcagatactttgtt 381

                                                                       
Query: 61  ctcttaaggaaatctgagaggactataagcaaaaagttgaatttttccagcagaaagtac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ctcttaaggaaatctgagaggactataagcaaaaagttgaatttttccagcagaaagtac 321

                                                                       
Query: 121 ttttgcttattttgcttatcttaatcctattttttttctgtggaatttctgctcctgttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ttttgcttattttgcttatcttaatcctattttttttctgtggaatttctgctcctgttt 261

                                                                       
Query: 181 ccttcctaatgttttctccctacaatgcccgcaccatttgatcctctgctaagcatagac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ccttcctaatgttttctccctacaatgcccgcaccatttgatcctctgctaagcatagac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)