Query= MSMg01no401_k07.b1 MSMg01no401_k07.b1 CHROMAT_FILE:
MSMg01no401_k07.b1 PHD_FILE: MSMg01no401_k07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:19 2005
(271 letters)
>mm_chr4_73754533_73755204
Length = 672
Score = 400 bits (207), Expect = e-116
Identities = 253/277 (91%), Gaps = 16/277 (5%)
Strand = Plus / Plus
Query: 1 ccagaagganntttcttactg-cgttgttgtcatcatcattgatgttattgttgtttcta 59
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccagaaggatttttcttactgtggttgttgtcatcatcattgatgttattgttgtttcta 260
Query: 60 tttcattaatttcttctctgatttttcacattttttacagtgtgatggtttcagtttgtt 119
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 261 tttcattaatttcttctctgatttttcacattttttacagtgtgacggtttcagtttgtt 320
Query: 120 ttgcttttgagttttcaaaattattaatttatataatattttctattaaactttttctgt 179
|||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 321 ttgcttttgagttttcaaaattattaatttatataataaattcaattaaactttttctgt 380
Query: 180 tttttaacacagacatttcgaggtataaactttttctcatgaa-----ttttttttt--t 232
|||||||||||||| |||||||||||||||||||||||||||| ||||||||| |
Sbjct: 381 tttttaacacagacttttcgaggtataaactttttctcatgaaaaaggtttttttttaat 440
Query: 233 ttttcaacncagagattataattatttatatcttttc 269
|| |||||||||||||||||||||||||||
Sbjct: 441 tt--------agagattataattatttatatcttttc 469
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 672
Length adjustment: 9
Effective length of query: 262
Effective length of database: 663
Effective search space: 173706
Effective search space used: 173706
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no401_k07.g1 MSMg01no401_k07.g1 CHROMAT_FILE:
MSMg01no401_k07.g1 PHD_FILE: MSMg01no401_k07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:19 2005
(276 letters)
>mm_chr4_73936812_73937487
Length = 676
Score = 412 bits (213), Expect = e-119
Identities = 257/273 (94%), Gaps = 7/273 (2%)
Strand = Plus / Minus
Query: 1 tcatattcaaaagaacgataaagacatctaacagctacatgagggacaaaagtaacatat 60
||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 405 tcatattcaaaagaatgataaagacatctaatagctacatgagggagaaaagtaacatat 346
Query: 61 ttgtgaaacaaagaagcattagagaaacagcaaacactacaaaaacaacaaaataaaagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 ttgtgaaacaaagaagcattagagaaacagcaaacactacaaaaacaacaaaataaaagg 286
Query: 121 aatatacctttcaataattctgagtattaattagctttaatcaaaagatatagagtatct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 285 aatatacctttcaataattctgagtattaattagctttaatcaaaagatatagagtagct 226
Query: 181 tttaaaacaaacaaggaagtaaggaagaagagaaga--agagaagagaagagaagaggag 238
|||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct: 225 tttaaaactaacaaggaagtaaggaagaagagaagagaagagaagagaagagaagagaag 166
Query: 239 aggagatgataggagaggagaggagaggagagg 271
|| ||| || || ||| |||| |||| |||||
Sbjct: 165 agaaga-ga-ag-agaagagaagaga--agagg 138
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 276
Length of database: 676
Length adjustment: 9
Effective length of query: 267
Effective length of database: 667
Effective search space: 178089
Effective search space used: 178089
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
