BAC Information

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BAC

Clone NameMSMg01-401M03
Chromosome4 (Build37)
Map Location 50,760,352 - 50,760,594
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666663
Downstream geneLOC100040979, LOC666681, LOC100040814
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-401M03.T7 (MSMg01no401_m03.b1)MSMg01-401M03.TJ (MSMg01no401_m03.g1)
ACCAG501066AG501067
length759751
length of high quality
(start - end)
236 (86 - 321)247 (75 - 321)
definitionCHROMAT_FILE: MSMg01no401_m03.b1 PHD_FILE: MSMg01no401_m03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:27 2005CHROMAT_FILE: MSMg01no401_m03.g1 PHD_FILE: MSMg01no401_m03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGCAAATGGGCG
GAANNCNNCAGGATTACTAGATATGTCTCCGNGNNCATTTCTGATTTTGT
TAATTAGAATACTTTCCCTGTGCCCTCTAGTGAGTCTGGCTAAGGGTTTA
TCTATATTGTTGATTTTCTCAAAGAACCAGCTCCTCGATTTGTTGATTCT
TTGAATAGTTCTTCTTGTTTCCACTTGGTTGATTTCACCCCTGAGTTTGA
TTATTTTCTGCTGTCTACTCCTATTGGGTGAATTTGCTTCCTTTTCTTCT
ATAACTTTTAGGTGTGTTGNCATGCNGTTAGCGTGTGCTCTCCCTAGTTT
CTTTTTAGAGTGTTTCAGAGCTATGAGTTTTCCTCTTAGAAATGCTTTCA
TTGTGTCCCATAAGTTTGGGTATGTTGTGGTTTCATTTTCATGAAACTCT
AAAATGTCTTTAATTTCTTTCTTTATTCCATCCTTGACCAAGGTATCATT
GAGAAGAGTATTGTTCAGTTTCCACATGATTGTTGGCTTTCTTTTATTTA
TGTTGCTATTGAAGATCAGCCTTATTCCATGTTGATTCTTATATGAAGCA
TGGCATTATTTTTATACTTTTGTTTCTGATTATGCCTTGTCCCGTGATTA
CCCTTTTTTTTTCTTTTTTTTTTAATTCCACTTTGATCCTTTTTCAAATA
ACTTATTTTTTCCCCTGCCCTATTCTTTTCCTTGCCCTCTTTTACCCTCT
TCTTTTCCC
NNCCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTTTCGCAGAAATCTTTGTTTAGCTCTGAACCCCATATT
TTATTTTCCCCATAATTTAATTTGTCCCATCCTGTGGGATTCATTTATTC
GTGGGTGCGGAGGGGGACCGCAAAACTGGAAGAAAATGGGAGGAAGGGAA
GTAGAAGCAGAGAACAAGAAGGGTGCCTATCAAGGTCTCTGTCTATTAGG
CTGATACACCTGGTTTTAAAGCACACATTGTGGGGTGTAGGAGAGGGGTC
GAGGGGGAATTTAACAAATATCATAGATTTGGGCATCTGCTGACATGAGG
GCTGAAGTTAGGTTCCAGGTGGCGGGCACTTTGCATCTTATCTCCGGAAC
ATATATCCTCCTCAACAGCCTTGGGGTGTCAGGCCAGGCTGAGGCATAAC
TCATGTCCTTGGAAGTCATGGAAATTCAGGAAGAGATAAAGAAGAGGGGA
TTATAATTCAGCTTTTACAGCCTCAGGTGCCAGGACGGGAACAGGGAGGA
GGGAGTAAAAACGGTCTCCTATCACGAGGCCATTTGGCTTGTCAGGGTGG
CAGAGTGTGAAAGCTTCGATTTCTCATGCTATGGTCCCTTGTCTATTTGT
TTCCAATTTTTTTTTTCTCGTCCTTGTCCCCTTCTTTTTCTTTCCTTTTC
CTTGGCCCCCTTCTCCTGCTGTCTATGCCTCCCTTTTCCTTTTCCCCTTC
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no401_m03.g1 MSMg01no401_m03.g1 CHROMAT_FILE:
MSMg01no401_m03.g1 PHD_FILE: MSMg01no401_m03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:28 2005
         (247 letters)



>mm_chr4_50760152_50760797
          Length = 646

 Score =  433 bits (224), Expect = e-126
 Identities = 239/244 (97%), Gaps = 1/244 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctttgtttagctctgaaccccatattttattttccccataatttaatttgtcccatcctg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 443 ctttgtttagctctgaaccccatattttattttccccataatttaatttgtcccatcccg 384

                                                                       
Query: 61  tgggattcatttattcgtgggtgcggagggggaccgcaaaactggaagaaaatgggagga 120
           |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 383 tgggattcatttattcgtgggt-ccgagggggaccgcaaaactggaagaaaatgggagga 325

                                                                       
Query: 121 agggaagtagaagcagagaacaagaagggtgcctatcaaggtctctgtctattaggctga 180
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 324 agggaagtagaagcagagaacaagaagggtgcctatcaaggtctccgtctattaggctga 265

                                                                       
Query: 181 tacacctggttttaaagcacacattgtggggtgtaggagaggggtcgagggggaatttaa 240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gacacctggttttaaagcacacattgtggggtgtaggagaggggtcgagggggaatttaa 205

               
Query: 241 caaa 244
           ||||
Sbjct: 204 caaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 646
Length adjustment: 9
Effective length of query: 238
Effective length of database: 637
Effective search space:   151606
Effective search space used:   151606
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)