Query= MSMg01no402_g23.b1 MSMg01no402_g23.b1 CHROMAT_FILE:
MSMg01no402_g23.b1 PHD_FILE: MSMg01no402_g23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:16:19 2005
(503 letters)
>mm_chr4_20316442_20317344
Length = 903
Score = 942 bits (487), Expect = 0.0
Identities = 499/503 (99%)
Strand = Plus / Minus
Query: 1 aatgagtatcataacttaggacctggcttttgcagactttaattgcattttaaatgacag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 aatgagtatcataacttaggacctggcttttgcagactttaattgcattttaaatgacag 644
Query: 61 gtttctgaaacctgagtaattttcaacttttaatttgggattttgatttttgatgctttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 gtttctgaaacctgagtaattttcaacttttaatttgggattttgatttttgatgctttt 584
Query: 121 atgatttcaaggcccagctgtcccctagtccccatactgtgggatattctcattcttccc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 atgatttcaaggcccagctgtcccctagtccccatactgtgggatattctcattcttccc 524
Query: 181 agaagccctccaccctcttccttcctttttactttcaatggaagcctgtgctggtgttct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 agaagccctccaccctcttccttcctttttactttcaatggaagcctgtgctggtgttct 464
Query: 241 gcaattctgtttctgcctccagctaagactgttcagggaagataaagaaacctataaaca 300
||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 463 gcaattctgaggctgcctccagctaagactgttcagggaagataaagaaaccaataaaca 404
Query: 301 agacaagaaaaaggaactggccagtcaatccacattaggaaataactgaagattttatta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 agacaagaaaaaggaactggccagtcaatccacattaggaaataactgaagattttatta 344
Query: 361 aaaatccatttgtgtgaaatgaattcctctaaaataaaaagttgttctgtgttttctaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 aaaatccatttgtgtgaaatgaattcctctaaaataaaaagttgttctgtgttttctaaa 284
Query: 421 ctcaaactttagaaaaatcaattttcagtagatgaggtcatgttagttcttcctgtttaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 ctcaaactttagaaaaatcaattttcagtagatgaggtcatgttagttcttcctgtttaa 224
Query: 481 ctgtcttcaggctagttacactg 503
|||||||||||||||||||||||
Sbjct: 223 ctgtcttcaggctagttacactg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space: 440249
Effective search space used: 440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no402_g23.g1 MSMg01no402_g23.g1 CHROMAT_FILE:
MSMg01no402_g23.g1 PHD_FILE: MSMg01no402_g23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:16:19 2005
(465 letters)
>mm_chr4_20143252_20144116
Length = 865
Score = 810 bits (419), Expect = 0.0
Identities = 446/465 (95%), Gaps = 16/465 (3%)
Strand = Plus / Plus
Query: 1 ttttcattaaattctccacaggaggccaacactgtctcatcaagaatacatgtatccagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttcattaaattctccacaggaggccaacactgtctcatcaagaatacatgtatccagc 260
Query: 61 cgatgattgctcaggtcgaggggtagagacaggtacagttttgtttaaaagctccaatag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgatgattgctcaggtcgaggggtagagacaggtacagttttgtttaaaagctccaatag 320
Query: 121 cttttagttctgggctttctgtttgaaacaacacattttgctttgcttgcttttgtacag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttttagttctgggctttctgtttgaaacaacacattttgctttgcttgcttttgtacag 380
Query: 181 ctgagtgtgtcccttcttgagattagctgtcagaatgatgctgaaatcttgcctactgat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgagtgtgtcccttcttgagattagctgtcagaatgatgctgaaatcttgcctactgat 440
Query: 241 gacttctagtgatgcaggactgtcttagttagggattctatttctgtaatgaaacactgt 300
||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct: 441 gacttctagtgatgcagga----------------ttctatctctgtaatgaaacactgt 484
Query: 301 gaccaaaagcaaattggggagggggtggtctatttggcttacactttcatatcctcgtag 360
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 gactaaaagcaagttggggagggggtggtctatttggcttacactttcatatcctcgtag 544
Query: 361 tccgtcattgaaggaagccagggcagaaattcaaacagggagaggacatggagacaggag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 tccgtcattgaaggaagccagggcagaaattcaaacagggagaggacatggagacaggag 604
Query: 421 cggatgcagaggacacagagggttactgcttactggcttgctcct 465
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 cggatgcagaggacacagagggttactgcttactggcttgctcct 649
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 865
Length adjustment: 10
Effective length of query: 455
Effective length of database: 855
Effective search space: 389025
Effective search space used: 389025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
