Query= MSMg01no402_l06.b1 MSMg01no402_l06.b1 CHROMAT_FILE:
MSMg01no402_l06.b1 PHD_FILE: MSMg01no402_l06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:16:42 2005
(550 letters)
>mm_chr4_49992399_49993348
Length = 950
Score = 901 bits (466), Expect = 0.0
Identities = 499/510 (97%), Gaps = 2/510 (0%)
Strand = Plus / Minus
Query: 4 ggaattcatttgatg-tcgcgacttgctaaaaaatttatttctaacttttaccatcatga 62
||||||||||||||| | | |||||||||||||||| |||||||||||||||||||||||
Sbjct: 509 ggaattcatttgatgat-gtgacttgctaaaaaattgatttctaacttttaccatcatga 451
Query: 63 aatttccctgaactaattagccaagtccagagataagttgatcctgtctagatcctcctg 122
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 450 aatttccctgaactaattagccaagtccagagatatgttgatcctgtctagatcctcctg 391
Query: 123 tgcaaatttagcttacatttctcaactctatgccctttacctaacctcaggcaaatgggt 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 tgcaaatttagcttacatttctcaactctatgccctttacctaacctcaggcaaatgggt 331
Query: 183 tctatcttgatgtagggaagtccctaaatcattggctgagatgagatatattagtctcta 242
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 330 tctatcttgatgtagggaagtccctaaatcattggctgaggtgagatatattagtctcta 271
Query: 243 tccactatctacagactattatctcagctacactgtatctggtaacatataggtaccact 302
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 270 tccactatctacagactattatctcagctacactgtagctggtaacatataggtaccact 211
Query: 303 taaaatatatgggctctattctaaaaacttcacataaattaaatcatttttatgatccac 362
||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 210 taaaataaatgggctctattttaaaaacttcacataaattaaatcattttcatgatccac 151
Query: 363 aaatagggagtatgattactcttgagattttagaaaaatatgatgaatagaaaaggtata 422
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 150 aaatagggagtatgattactattgagattttagaaaaatatgatgaatagaaaaggtata 91
Query: 423 agacatctccaaggtccctctgctagtaaatagccaagctgggatcctaagggagactct 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90 agacatctccaaggtccctctgctagtaaatagccaagctgggatcctaagggagactct 31
Query: 483 aaagcattattcttcctcttatccacatac 512
||||||||||||||||||||||||||||||
Sbjct: 30 aaagcattattcttcctcttatccacatac 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space: 507600
Effective search space used: 507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no402_l06.g1 MSMg01no402_l06.g1 CHROMAT_FILE:
MSMg01no402_l06.g1 PHD_FILE: MSMg01no402_l06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:16:42 2005
(388 letters)
>mm_chr4_49853884_49854671
Length = 788
Score = 673 bits (348), Expect = 0.0
Identities = 382/398 (95%), Gaps = 10/398 (2%)
Strand = Plus / Plus
Query: 1 agaaagaattgatcttctaaataaaataagtctgcttcaggtatgagtctgaatatggtg 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 agaaagaattgatcttctaaataaaataagtctgcttcaggtatgagtccgaatatggtg 260
Query: 61 gtagagaaggaatcttttgcgtggaaatgtactttgactcattccatgttatattaattt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtagagaaggaatcttttgcgtggaaatgtactttgactcattccatgttatattaattt 320
Query: 121 tttattgtgttgcaataagcatgattctcaaaaataaatagttgcctcacttacttttgt 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttattgtgttgcaataagcatgattctcaaaaataaatagttgcctcacttacttttgg 380
Query: 181 tggattagtctttgaaggaaattagtccctgatgacctaacctctctactcatgttttaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggattagtctttgaaggaaattagtccctgatgacctaacctctctactcatgttttaa 440
Query: 241 tatttttttattaattttaaacgtttatttttttttt-aatgcactgaatctatact--- 296
|||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 441 tatttttttaaaaattttaaacgtttatttttttttttaatgcactgaatctatactttt 500
Query: 297 ---cga---gttttgcttgcatgtttgcttgtgtaccacatgcatgcttgatccacacag 350
| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgctataagttttgcttgcatgtttgcttgtgtaccacatgcatgcttgatccacacag 560
Query: 351 aggccagaagagggcatcagatcacctgggacttgagt 388
|||||||||||||||||||| |||||||||||||||||
Sbjct: 561 aggccagaagagggcatcaggtcacctgggacttgagt 598
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 788
Length adjustment: 9
Effective length of query: 379
Effective length of database: 779
Effective search space: 295241
Effective search space used: 295241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
