BAC Information

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BAC

Clone NameMSMg01-402N09
Chromosome4 (Build37)
Map Location 73,589,217 - 73,589,400
singlet/doubletsinglet
Overlap gene2310002L09Rik
Upstream geneLOC667713, LOC100039698, OTTMUSG00000001246, LOC100039726, LOC667722, LOC623115, OTTMUSG00000000281, OTTMUSG00000000280, OTTMUSG00000000282, OTTMUSG00000000283, Gm428, Rasef, LOC667768, LOC545637, LOC623272, OTTMUSG00000014862, OTTMUSG00000004010
Downstream geneFrmd3, LOC100039774, Jmjd2c, LOC100040258, LOC100039814
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-402N09.T7 (MSMg01no402_n09.b1)MSMg01-402N09.TJ (MSMg01no402_n09.g1)
ACCAG501889AG501890
length749796
length of high quality
(start - end)
417 (41 - 457)178 (71 - 248)
definitionCHROMAT_FILE: MSMg01no402_n09.b1 PHD_FILE: MSMg01no402_n09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:16:52 2005CHROMAT_FILE: MSMg01no402_n09.g1 PHD_FILE: MSMg01no402_n09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:16:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAAT
TCTCTTTGATACCTTACTGTTTAGGCTGCTTTTTTTTTTTTAGGGGAATG
AGTTGACATCATCATAGAAGCCTTCTATGTCCCTTTTCCCTTTTGCTCAA
CTATGTCTCTGAAATCATCACTGCAGAAGTTAGAAGTGCTTGTTGACAGG
AACCTGATATAGCTGTCTCCTGAGAGGCTCTGCCAGAGCCTGACAAATAT
AGAGGAAGATGCTCGCAGCCGACCACTGGACTGAGCAAAGAGTCCCCAGT
GGAGTTAGAGAAAGGACTGAAGGAGCTGAAGGGGTTTGCAGTCTCATAGG
AGGAACAACAATATGAACCAACCAGACCACCCAGAGCTCAAAGGGACTAA
ATCACCAACCAAAGAATACATACGGAGGGACCCATGGCTCCAGCTGCGTT
ATGTATCAGAGGATGGCCTTGTTGGACATCAATGGGAGGAGAGGCCCTTG
GTCCTGTGAAGGTTAGATGCTCCAGTATAGGGGAATGCCAGGGAGGGAAG
GTGGAGTGTTTGCTTTCACTTTTTCTCCCCTCTTTTTCTCATTCCCTTCT
TTTTTTTTTTTCTCCCCCCCTTTTTTTTCTTTCCCTTACCCCTCTCCCTT
CTCTTTTTACTCCCCTTTTTTTTCCCCCCACCTCTTTTCCCCTTTTTTTT
TTCTTTTCTCTCTTTTTTTTTTTCTTATTCTTTCCCTTTTTTTTATTTC
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAAGGAATATGTAAAACTTTTCTGTAGAATG
TAGACATTAAGCAAAATCATATTAGTGTCAGACCTCGTTGGCTATAATAG
AATTGTAAGTTCTTAGCTGGAGATATCCTAAAATAAACCACAGTGATCAA
AGTTTGCAATTACCTTTAGATCTGTCAGCAGACCTCCAACTATGGCAGAG
TTTTTAAATATGTGGCGTAATTCATACGACTGATATTATGAGTGGAGTGA
AGTTTTGAGATTCACCTATACCATAAGATTTAAGAAACCCATACCTAGAT
GTTACTTTATCATGTACAATCCCGGTGGCAAAAATACCCTTTTATCTTCC
AAGTTGTTTTCTTTAAAACTATTGTGNGACGGGGGAACTAAAAAAAAATA
AAAATTGATGAAGAGAAGTAGTCAAAATNNTNCCNCCCCNCCCTTCCCCC
NCTTTTGGGTTTCCCCCGTAAAAAATTTTAGTGCATTTTTTGCGCCTCCT
CTCACTGTTTTCACTTATAAAAAAAATTTTTCCNCCCCCCCTCCCCCCAC
TAAATTTTTTTTTTCTCTGGGGGTTGTAATAATTTCCCCCTTTTCTTAAC
ATTCTTCCTCCGCAAATTGTAAGCCGCCTTTTTTTCCCCTCCCTCTTTTC
CTCTTCTTCGCGCTTCCTTCTTTTTCCTCTCTCCCTCCTCTCTATCCCCC
CTTTCTTCTCCTTTCTCCTCTCCCTTCTCTTCTTTTCCTATTCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no402_n09.g1 MSMg01no402_n09.g1 CHROMAT_FILE:
MSMg01no402_n09.g1 PHD_FILE: MSMg01no402_n09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:16:53 2005
         (178 letters)



>mm_chr4_73589017_73589594
          Length = 578

 Score =  317 bits (164), Expect = 2e-91
 Identities = 175/184 (95%), Gaps = 9/184 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggaatatgtaaaacttttctgtagaatgtagacattaagcaaaatcatattagtgtca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaggaatatgtaaaacttttctgtagaatgtagacattaagcaaaatcatattagtgtca 260

                                                                       
Query: 61  gacctcgttggctataatagaattgtaagttcttagctggagatatcctaaaataaacca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gacctcgttggctataatagaattgtaagttcttagctggagatatcctaaaataaacca 320

                                                                       
Query: 121 cagtgatcaaagtttgcaattacctttagatctgtca---------gcagacctccaact 171
           |||||||||||||||||||||||||||||||||||||         ||||||||||||||
Sbjct: 321 cagtgatcaaagtttgcaattacctttagatctgtcataatggtcagcagacctccaact 380

               
Query: 172 atgg 175
           ||||
Sbjct: 381 atgg 384


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 178
Length of database: 578
Length adjustment: 8
Effective length of query: 170
Effective length of database: 570
Effective search space:    96900
Effective search space used:    96900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)