BAC Information

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BAC

Clone NameMSMg01-402P12
Chromosome4 (Build37)
Map Location 66,707,557 - 66,707,811
singlet/doubletsinglet
Overlap genenone
Upstream geneAstn2, LOC667499, Tlr4
Downstream geneLOC100039379, Hmgb1-rs18, LOC433715
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-402P12.T7 (MSMg01no402_p12.b1)MSMg01-402P12.TJ (MSMg01no402_p12.g1)
ACCAG501991AG501992
length7731,216
length of high quality
(start - end)
260 (177 - 436)---
definitionCHROMAT_FILE: MSMg01no402_p12.b1 PHD_FILE: MSMg01no402_p12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:04 2005CHROMAT_FILE: MSMg01no402_p12.g1 PHD_FILE: MSMg01no402_p12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCACTCAGTTTGCCAAGCTTGGAAACAAGTACGTCGAGTTGTTGAGCTAC
TTCACTGGCCTTGAGGAGTTCATAGCCTTAAACAACTGGCCCAGGTAACA
ATTCCAAGCCTCCAGGCAATGAGTAAGAACTATCTATGTGTTATTATCTG
GAACTTTGCAACTCATGGTGCTCTCTTTACTTAAGAACTAATTCTGTACC
TCATGACACTTATAATGATGAATCTCAAGGGCTAATAATTTACTTCCAAA
TTATCCAGTGAAGTCACTGGATCAATGTGGGTTTAGCATTAATACATCCC
AATTCCATTATACTTAGCTATCCAGACATATTTAGAACTTCATGGACCAT
AAAAGTCCCAGGAGTCTGATACAATATAATATCATGGCAGATTTAGTTAC
AATCTAATTGGCTTTTACTTATGATTCATGAATAGGGATGCACCTTACTT
TGGACCAAGTATATTCTACGCATAATAACAATAGAGGAGTACTTTCTGTA
AGGCGCGAATGAACAACCAGACGATAAGCCCTAAAACGACATAATATGTT
GATTACTTAACAAGAGGAGCATCCTGTTATCCTGACTGAAGACGAATCTC
AATTTTACGTTTTTCTGAACCTTTTCCACCCCTGGCTGCCCCTCCAATTT
TTCCGCCTTTGCTCTCAAACTATTCCCAATTAAACTCCCACGCGGTCAAC
CTCTACCACCCAACTGTTTTCTG
GTAGAAAGAGAAGGAGAGGAGCGAACAAGAGGGGCGGCTGCGTCCCCAAC
CATNCGTCATNNNNCGNNGGCGGGGGCGTAGTTGTTTATAGCGAGGATAT
TAGGTATTCTTTTGAGGAACGCGGGCGTGTGGAGGCTCACGTCCGGCGCG
CTGGGCACGCTAGTCTGTTCGCTCCGTGCGGCTCGCGAACTGATCAAACT
GATCTTATCATTCATAACTGACTTATATACAGTCGTGTGCTCACCGCACT
AGACTAGAATACAACCGTCGCCGTAATTACACGACGCTAGCGTACCAACC
AGCGACACATCGCCGTGACCAGTACTCAATCCGCTCATGCTCATCGCCCC
ACATGATGTATCAATCTGATCAGGACGCAATGTACAGTAGCAGCATAATC
ATAATGCAGCGCACCGCCAGATTTGTAAAGCGCATCGCGAGAGCGTTGGC
CGGGAGAGTGTAGTCGTTGATCCTGGTCGCCGCTAGCGCACATTACGACA
TGCATACCACTCCGTTGCCAGCACCGCACTATCTGTGCGCGTTACTACAT
CATTATACATCACACACCCTCTCTCTTCTCACTGTGCACTGATGCTGTAG
ATCCACGATACACTTGTGTACGCGGTGGGAGATCTGTTAGTCTCGAGACC
CGCAGCGATACTAAGCGAGATGTAACGGACGTGAGAGGAGGTGCGNCAGG
AGAGATGACGAGTGGTAAGACGCCACCAGACGTGGTGCGTACGCACCACG
CACCGCACGAGTTATAAATAGAAGCAAAGAATTGCATCGTACACATAACT
GACAAAGTCGTATACTAATAGTAGAGAACTTGTGGCGAGGCCCGACAGTG
TCGTGGTACATGACTACGGACACTGAATACCGAGTACAATTAGGTAACCG
ATAAGATACGTATCTGTGAGAACTCTGTGCGAGGTGCGGAAGAGCGCGGA
GTCGAGTGTAGCCGCGCATGACGCACCAGTAAGGCACAGCGACGGCCGTC
AGGATGGTAGACGCGCAACGTATTAGAATCACCGCGCGCCTCCACTTCGT
ATAATATAAGTAAGATAAAGACACAAGACAGCGCGTAGATAAGATGATAA
GTCGCGGCTATGGATAGTTCATGTACATGGCCACGACGATATGCTGTAGA
TCTGTACCTGCATGGNGCGCGAAGGNNAATACACACGCACCNTGTGACAC
ATGGACTGTTGTGCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no402_p12.b1 MSMg01no402_p12.b1 CHROMAT_FILE:
MSMg01no402_p12.b1 PHD_FILE: MSMg01no402_p12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:04 2005
         (260 letters)



>mm_chr4_66707356_66708015
          Length = 660

 Score =  485 bits (251), Expect = e-142
 Identities = 254/255 (99%)
 Strand = Plus / Minus

                                                                       
Query: 2   aactatctatgtgttattatctggaactttgcaactcatggtgctctctttacttaagaa 61
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 456 aactatctatgtgttattatctgtaactttgcaactcatggtgctctctttacttaagaa 397

                                                                       
Query: 62  ctaattctgtacctcatgacacttataatgatgaatctcaagggctaataatttacttcc 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 ctaattctgtacctcatgacacttataatgatgaatctcaagggctaataatttacttcc 337

                                                                       
Query: 122 aaattatccagtgaagtcactggatcaatgtgggtttagcattaatacatcccaattcca 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 aaattatccagtgaagtcactggatcaatgtgggtttagcattaatacatcccaattcca 277

                                                                       
Query: 182 ttatacttagctatccagacatatttagaacttcatggaccataaaagtcccaggagtct 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 ttatacttagctatccagacatatttagaacttcatggaccataaaagtcccaggagtct 217

                          
Query: 242 gatacaatataatat 256
           |||||||||||||||
Sbjct: 216 gatacaatataatat 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 260
Length of database: 660
Length adjustment: 9
Effective length of query: 251
Effective length of database: 651
Effective search space:   163401
Effective search space used:   163401
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)