BAC Information

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BAC

Clone NameMSMg01-402P17
Chromosome4 (Build37)
Map Location 138,660,891 - 138,849,935
singlet/doubletdoublet
Overlap gene2310028O11Rik, Hspe1-ps4, 9530077C14Rik, Capzb
Upstream geneEif4g3, Hp1bp3, Kif17, Ddost, Pink1, Cda, LOC625638, LOC625646, 0610009K11Rik, Camk2n1, LOC100040618, 4931403E03Rik, Ubxd3, Pla2g2c, Pla2g2f, Pla2g2d, Pla2g5, Pla2g2a, Pla2g2e, Otud3, Rnf186, Tmco4, Htr6, LOC665683, Nbl1
Downstream genePqlc2, LOC100042808, Akr7a5, LOC625977, LOC626000, Mrto4, C230096C10Rik, Zubr1, C79267, Aldh4a1, Tas1r2, Pax7, Gm1667, Klhdc7a, Igsf21, LOC100040728
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-402P17.T7 (MSMg01no402_p17.b1)MSMg01-402P17.TJ (MSMg01no402_p17.g1)
ACCAG502001AG502002
length747774
length of high quality
(start - end)
244 (72 - 315)213 (69 - 281)
definitionCHROMAT_FILE: MSMg01no402_p17.b1 PHD_FILE: MSMg01no402_p17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:05 2005CHROMAT_FILE: MSMg01no402_p17.g1 PHD_FILE: MSMg01no402_p17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(138,660,891 - 138,661,133)(138,849,738 - 138,849,935)
sequence
TATTTAAATTTGTGGCCGCTATACGACTACTAATGCGAGAGGACCGCGGA
ATTCTGTGATTTCCAAGAATGGATTCTGTCCTTACTTTGACGTATTTTCC
ATGTAGAAGATACGGAGCCTGAAAGTCATGCTGACAGTTGGAGTAGGCCA
TTCCCAATCCCACGCCAGAACCAAAGGCTAATGGCCACATTCTTCCTATG
AGCAGAAAACAAGAAATCCCAACAGGGAACTGTTAAGAGCACATAAATCC
TCCGCCCCAGATGTGTGCCCAGCAAACATTATATTGCTAACACGTGATGG
GTCAGCAGACACCATTTTTATCCAGCACATTTATTAGGTGCCTGGGCTGC
TACATTTGATGCAAAGAGCCCAGTCTGTCATTTGTGCACTGAACTATATA
GTCTTAGCCTCGTCAGAGGAACATCTATTGGTCAGGTGCCTGAATTGTTT
ATTATTAATGTCAATTTACGAATACTCACCAACTTTGGTTACTCACAGAA
CACCATGGGGCTCCCTCACACAAGTCTACATCCCTCTAGTTCCAGTCATT
GTCAGTTTTTCATGAACTGAGGTCAAGGTGACCTGTTTGGGTTTTATTCC
GAACTCATATTTTCAAGTTCTTCCCAAGAAGGCGATCCTGTTTGTTCCCC
CCTCATTATTTCAACGGAGACACATGGCCCCTTTTCTTGGCCCTCTTTGC
GCTTTACTAATCATGTATGCGTCCCTTCCCCCATGTCCACTTTTTAN
CTCATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTTCCCCCGGAATTCTTTGAGTGTGCCCATCACCAGTCTG
TCACTGCCGTTCCTTGTATGGCAGGGAAGAGGCACTACCACATAGGTATG
GCATCAAGGCTAGGGAGTGGTGTGAAGAAAAGATTGTCCTGGGCATCGAA
AGCCTGAGTCTATTCCAATTCCACCCTCTGCTGAGGCTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCCCACAGGCCCTGCCTT
GAATTCCTTGGCCACTGTTTTATTGAATGAGGAACTCTTGAGTCAGGAAG
TCTAGGGAGGATCTCACAGCTTGTAGTCTCCATGTACTAGATCTGAATAT
TTTCGTTACCGGTTTATTTTAATCCTTTACATATTTCTGACCTATGCTCT
TCTGCCTACGGGTTTCCTATACCTGCCTCCTCCTTGTTTTTCTGAACGCT
ACTCCATCAATCACTATAGTTTCCGCGGTCATTTGTTATCATCCTGATTT
TTTCTCCTTTATGAACCCAATCATTCTTTTTTTCTTTTACCTCTCACTCG
CCTCTTTTTTTCCTCCCCTATCATACTCCCTTTCCCTCCCCCGTCTTCTG
TCTGCCGCTAAATATCCCTCCCTGTATTCCTCCCCGTTACCCTCCCTGCC
TTTCTCCTTTCTCCTCTCCCCTTCCCTCTCTTCTTTTTCTTATCCTTCCC
CCTATCCTTCTTCTCATTCTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no402_p17.b1 MSMg01no402_p17.b1 CHROMAT_FILE:
MSMg01no402_p17.b1 PHD_FILE: MSMg01no402_p17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:05 2005
         (244 letters)



>mm_chr4_138660691_138661334
          Length = 644

 Score =  462 bits (239), Expect = e-135
 Identities = 242/243 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gattctgtccttactttgacgtattttccatgtagaagatacggagcctgaaagtcatgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gattctgtccttactttgacgtattttccatgtagaagatacggagcctgaaagtcatgc 260

                                                                       
Query: 61  tgacagttggagtaggccattcccaatcccacgccagaaccaaaggctaatggccacatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgacagttggagtaggccattcccaatcccacgccagaaccaaaggctaatggccacatt 320

                                                                       
Query: 121 cttcctatgagcagaaaacaagaaatcccaacagggaactgttaagagcacataaatcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttcctatgagcagaaaacaagaaatcccaacagggaactgttaagagcacataaatcct 380

                                                                       
Query: 181 ccgccccagatgtgtgcccagcaaacattatattgctaacacgtgatgggtcagcagaca 240
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 381 ccgccccagatgtgtgcccagcaaacattatattgctaacacgtgatgggccagcagaca 440

              
Query: 241 cca 243
           |||
Sbjct: 441 cca 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no402_p17.g1 MSMg01no402_p17.g1 CHROMAT_FILE:
MSMg01no402_p17.g1 PHD_FILE: MSMg01no402_p17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:05 2005
         (213 letters)



>mm_chr4_138849567_138850179
          Length = 613

 Score =  383 bits (198), Expect = e-111
 Identities = 198/198 (100%)
 Strand = Plus / Minus

                                                                       
Query: 2   gaattctttgagtgtgcccatcaccagtctgtcactgccgttccttgtatggcagggaag 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 gaattctttgagtgtgcccatcaccagtctgtcactgccgttccttgtatggcagggaag 310

                                                                       
Query: 62  aggcactaccacataggtatggcatcaaggctagggagtggtgtgaagaaaagattgtcc 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 aggcactaccacataggtatggcatcaaggctagggagtggtgtgaagaaaagattgtcc 250

                                                                       
Query: 122 tgggcatcgaaagcctgagtctattccaattccaccctctgctgaggctgtgtgtgtgtg 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tgggcatcgaaagcctgagtctattccaattccaccctctgctgaggctgtgtgtgtgtg 190

                             
Query: 182 tgtgtgtgtgtgtgtgtg 199
           ||||||||||||||||||
Sbjct: 189 tgtgtgtgtgtgtgtgtg 172


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 213
Length of database: 613
Length adjustment: 9
Effective length of query: 204
Effective length of database: 604
Effective search space:   123216
Effective search space used:   123216
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)