XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTC
TTATCCAAGATAATAATAACTTTTGTGTTGAAGCTCTTCAGTGACTTCCT
TGCTACAGCATAATGAAGAGATTTAGAGATACTTCTAAAGTACAATGAAC
ACAATTTGACATATAAAGTAGAGAGGAAAGAGAAAATAAGACATGTTAAA
GATAATCTTGAAATATGAGAGAAATTTTAAAAGATCACACTTGTAACAGA
AGTAAGAGAAGGCAGGTTCAATAGAAGACCTGCTGGGTTTAGAGCATGGG
AAATATCAGAATAGAGGAGCAGAAGGTAAAAACTGGAGACAGATCACTTG
TTGAAGCCATGGAGATGAGTCAAATTCTCAGGAATATCTATTGAACAAGA
GGTGAGAAATGACGGAACATGAAAGAGTAACAACATGTAAGACATTATGT
AAGTTAAAGGTACTATGAACAAGACAAAAAAGAGAAAACCCAGGCAAGTT
ATTTGAATGTGAAATAGACTTGCAGTGTGTCACCTATTAGTGAACAGAAA
ATACAGTTCAAAGTAACATATTTTGAAAACCAGGATGAATGAGAAACAAA
GCATCTAGTGGCTTATGAATATTTTTATGATTTGAACTTCATTTTTTGTA
TTCAGCACATAAAGTCATTTCATCCCTATTCTTTCTTACTATCACATATT
ACCACTGATCTATATGGGAGCCTCTCTGAATTTTGGGGACTTAAACTTTC
TTTTCTTTTTAACCTTACGACC

ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAAGTACAACTTTGAATAGGTAGGGCGAGAGT
GGACAGCCTTGTCTAGTCCCTGATTTTAGTGGGATTGCTTCCAGCTTCTC
ACCATTTACTTTGATTATGGATACTGGTTTGCAGTAGATTGCTTTTATCA
TGATTAGGTATGGGCCTTGAATTCCTGATCTTTCCAAGACTTTTATCACG
AATGGGTGTTGGATTTTGTCAAATGCTTTCTCAGCATCTAACGAGATGAT
CATGTGGTTTTTGTCTTTGAGTTTGTTTATATACTGGAGTACGTTGATGG
ATTTCCATATATTGAACAATCCCTGCATCCCTGGGATGAAACCTACTTGG
TCAGGATGGATGATTGTTTTGATGTGTTCTTGGATTTGGTTAGCAAGAAC
TTTATTGAGGATTTTCGCACCGATATCCATAAGGCAAATTGGCCTGAAAT
TCTCTATCTTTGCTGGGCCTTTTTGTGCATTAAGTATCCCACCATTTGTG
GTTTCCTTCAATGCACCCGTCCCAGTACCTTTTGTTTCTATTTTCTCGCC
AAACCTTGGTACATCTCGCGCCATATCCCCTTTCCACGTCTCCCTTTCTT
CCCGTCCTTACCCTACCTTGCCCTCGCCCCCCCTTTTTTCTTTCCCCCCC
CTTCCTCCCCGTCTCTTTCCCTCTCTTTCCTCATCTACCCTTTCCTCCCC
CTTTTATTCCTCCTTTCCCCTTTCCCCCG

Query= MSMg01no403_b19.b1 MSMg01no403_b19.b1 CHROMAT_FILE:
MSMg01no403_b19.b1 PHD_FILE: MSMg01no403_b19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:16 2005
         (602 letters)



>mm_chr4_16422031_16423035
          Length = 1005

 Score = 1085 bits (561), Expect = 0.0
 Identities = 591/601 (98%), Gaps = 3/601 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctctta-tccaag-ataataataacttttgtgttgaagctcttcagtgacttcc 62
           |||||||||||| |  ||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 805 gaattcctcttattgaaagtataataataacttttgtgttgaagcttttcagtgacttcc 746

                                                                       
Query: 63  ttgctacagcataatgaagagatttagagatacttctaaagtacaatgaacacaatttga 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ttgctacagcataatgaagagatttagagatacttctaaagtacaatgaacacaatttga 686

                                                                       
Query: 123 catataaagtagagaggaaagagaaaataagacatgttaaagataatcttgaaatatgag 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 catataaagtagagaggaaagagaaaataagacatgttaaagataatcttgaaatatgag 626

                                                                       
Query: 183 agaaattttaaaagatcacacttgtaacagaagtaagagaaggcaggttcaatagaagac 242
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 625 agaaattttaaaagatcacacttgtaacagaagtaagagaaggcagggtcaatagaagac 566

                                                                       
Query: 243 ctgctgggtttagagcatgggaaatatcagaatagaggagcagaaggtaaaaactggaga 302
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 565 ctgctgggtttagagcatgggaaatatcagaagagaggagcagaaggtaaaaactggaga 506

                                                                       
Query: 303 cagatcacttgttgaagccatggagatgagtcaaattctcaggaatatctattgaacaag 362
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 505 cagatcacttgttgaagccatggagatgagtcaaattctcaggtatatctattgaacaag 446

                                                                       
Query: 363 aggtgagaaatgacggaacatgaaagagtaacaacatgtaagacattatgtaagttaaag 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aggtgagaaatgacggaacatgaaagagtaacaacatgtaagacattatgtaagttaaag 386

                                                                       
Query: 423 gtactatgaacaagacaaaaaagagaaaacccaggcaagttatttgaatgtgaaatagac 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtactatgaacaagacaaaaaagagaaaacccaggcaagttatttgaatgtgaaatagac 326

                                                                       
Query: 483 ttgcagtgtgtcacctattagtgaacagaaaatacagttcaaagtaacatattttgaaaa 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttgcagtgtgtcacctattagtgaacagaaaatacagttcaaagtaacatattttgaaaa 266

                                                                       
Query: 543 ccaggatgaatgagaaacaaagcatct-agtggcttatgaatatttttatgatttgaact 601
           ||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct: 265 ccaggatgaatgagaaacaaagcatctaagaggcttatgaatatttttatgatttgaact 206

            
Query: 602 t 602
           |
Sbjct: 205 t 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1005
Length adjustment: 10
Effective length of query: 592
Effective length of database: 995
Effective search space:   589040
Effective search space used:   589040
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)