BAC Information

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BAC

Clone NameMSMg01-403C20
Chromosome4 (Build37)
Map Location 123,798,045 - 123,941,544
singlet/doubletdoublet
Overlap genenone
Upstream geneBmp8b, Ppie, Hpcal4, Nt5c1a, Heyl, LOC194197, LOC622334, Pabpc4, Bmp8a, Oxct2a, Macf1, D830031N03Rik, LOC100039110, Ndufs5, 6330407G11Rik, Rhbdl2, LOC667064, Mycbp, Rragc
Downstream gene1700057H15Rik, LOC100039332, Pou3f1, Utp11l, Fhl3, Sf3a3, LOC664991, Inpp5b, LOC100039433, Mtf1, Yrdc, Gm50, Epha10, Cdca8, 9930104L06Rik, Rspo1, Gnl2, Dnali1, Snip1, 2310005N01Rik, Zc3h12a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-403C20.T7 (MSMg01no403_c20.b1)MSMg01-403C20.TJ (MSMg01no403_c20.g1)
ACCAG502149AG502150
length776764
length of high quality
(start - end)		501 (39 - 539)448 (67 - 514)
definitionCHROMAT_FILE: MSMg01no403_c20.b1 PHD_FILE: MSMg01no403_c20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:22 2005CHROMAT_FILE: MSMg01no403_c20.g1 PHD_FILE: MSMg01no403_c20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:22 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,798,045 - 123,798,542)(123,941,097 - 123,941,544)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCC
CCTTATGCAAATGAGGCATCCCCAGCACCCTGGCCAATGGTGTACACTCA
TCATATATCCCCTATTCACCCCCAAAGGTTTAAAAAGCCTTTGTCCCCCC
TAATTAAACTAGCTGTCTCACTGGAGCTGCCTCCTGAGAAATCTGTTTCT
CCCTGTGCTCACGGCCACCTGAGGTCTCATCACCGCAACTGTCCTGTCAT
GTTCTCCCACTCAAACCAACCCCATTACAGGTTGGGGGAGCGGAGTGGGG
ATGACAAAGCCATTTCACAATAATTAATAATCAGATTGCATCACAATTGC
TAAACAGTGTCAGTTGAAGGTTTGGTTCTGTTCTACAGCCAAACCCTGCA
CCCACACAAACACATCAGGTGGTGTGCACCTTGTTTTTCATGCCGATGAA
AGATGAATCACGGTTAAATACTTGAAAGTACTGGTGTGGCTTGAGGAAAA
GGTGAAGCCATTCTTCTGTGTATGCATGCATGTGCACGTGTGAGCATGGG
CATGCGTGTATGCATGTATGCATGTGTACATGTGTGCATGTGTGCATTGG
TGCATGTATGCTTGACCGGCTGTGCTTGCTTGCTCCAACGTGTATATTTT
CATTCCTGCACCGCTTGTTCCCCGTTGAACCGTTCTCCATGCGTATATCC
CCCCATTATCCTCCATATTCTTCCCCCTTCTTATTTCCGCTCATTCTTCT
TCTTTTTTTCCCTTTTTACCCTTACA

GTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCTCTTCGGATGTTGATGCGGAGTGCCTTGGAGC
CTACACATGCCGCGTGGCAGCACACACGCCAGGCACTGAGGGGATGGTTT
GAACTGACCAGTTCAATGATCTCATTGTTGCTGGGTCACAGCTCTCCCCA
AGTCACAAGTGAACTGAGTTTGAGCCGATCTCCTTTGGGTTCTGGGTTGT
GGCATAGCATCCAATGAACATAAGACAGTGCTCTCAGGTGCTCTGGTGGA
AACATCTAGTAAGCAATCTAAACTGCTGTAACTGGCTGACAACTGGGAGC
CGGCTATTCCAGAAGGAAGCCACTGGGACCTCAGGAGAGACTCTTCCCAT
GTCCCGGGATAGCAAGATTATTAGTTTAAATACTGTGGAATCACCATTCT
TCAGAAACAGTGCGTGCCTGAACTAAGACTAACCTCTACTATGTGGATTC
ATCTTTCTGGATGAGTTTTCATTGATTGATGCCTGTGGTTATGTCCCACG
CTTAATACCCAGAGAGACCATGATAGGGAGAGCACCTGCGCCCTGGTGAT
GAAAATTCCTGCTAATGGTTTCAACAGACCCTGTTTCCATTATCCCCTTC
CCTTAACCCTTCCCTTTTGTTCTACAATCTCCGCCCGTTCTCTGCCTACA
TATATTTTCTTCCCCCTTCTTTTCCTTCCCCATCCCTTCCTATTTTGTTT
TCGTTATATTCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no403_c20.b1 MSMg01no403_c20.b1 CHROMAT_FILE:
MSMg01no403_c20.b1 PHD_FILE: MSMg01no403_c20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:22 2005
         (501 letters)



>mm_chr4_123797842_123798742
          Length = 901

 Score =  963 bits (498), Expect = 0.0
 Identities = 498/498 (100%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcccccttatgcaaatgaggcatccccagcaccctggccaatggtgtacactcat 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcccccttatgcaaatgaggcatccccagcaccctggccaatggtgtacactcat 263

                                                                       
Query: 64  catatatcccctattcacccccaaaggtttaaaaagcctttgtcccccctaattaaacta 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 catatatcccctattcacccccaaaggtttaaaaagcctttgtcccccctaattaaacta 323

                                                                       
Query: 124 gctgtctcactggagctgcctcctgagaaatctgtttctccctgtgctcacggccacctg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gctgtctcactggagctgcctcctgagaaatctgtttctccctgtgctcacggccacctg 383

                                                                       
Query: 184 aggtctcatcaccgcaactgtcctgtcatgttctcccactcaaaccaaccccattacagg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aggtctcatcaccgcaactgtcctgtcatgttctcccactcaaaccaaccccattacagg 443

                                                                       
Query: 244 ttgggggagcggagtggggatgacaaagccatttcacaataattaataatcagattgcat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttgggggagcggagtggggatgacaaagccatttcacaataattaataatcagattgcat 503

                                                                       
Query: 304 cacaattgctaaacagtgtcagttgaaggtttggttctgttctacagccaaaccctgcac 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cacaattgctaaacagtgtcagttgaaggtttggttctgttctacagccaaaccctgcac 563

                                                                       
Query: 364 ccacacaaacacatcaggtggtgtgcaccttgtttttcatgccgatgaaagatgaatcac 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ccacacaaacacatcaggtggtgtgcaccttgtttttcatgccgatgaaagatgaatcac 623

                                                                       
Query: 424 ggttaaatacttgaaagtactggtgtggcttgaggaaaaggtgaagccattcttctgtgt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ggttaaatacttgaaagtactggtgtggcttgaggaaaaggtgaagccattcttctgtgt 683

                             
Query: 484 atgcatgcatgtgcacgt 501
           ||||||||||||||||||
Sbjct: 684 atgcatgcatgtgcacgt 701


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space:   437481
Effective search space used:   437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no403_c20.g1 MSMg01no403_c20.g1 CHROMAT_FILE:
MSMg01no403_c20.g1 PHD_FILE: MSMg01no403_c20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:22 2005
         (448 letters)



>mm_chr4_123940897_123941744
          Length = 848

 Score =  866 bits (448), Expect = 0.0
 Identities = 448/448 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctcttcggatgttgatgcggagtgccttggagcctacacatgccgcgtggcagcacaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 tctcttcggatgttgatgcggagtgccttggagcctacacatgccgcgtggcagcacaca 589

                                                                       
Query: 61  cgccaggcactgaggggatggtttgaactgaccagttcaatgatctcattgttgctgggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 cgccaggcactgaggggatggtttgaactgaccagttcaatgatctcattgttgctgggt 529

                                                                       
Query: 121 cacagctctccccaagtcacaagtgaactgagtttgagccgatctcctttgggttctggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 cacagctctccccaagtcacaagtgaactgagtttgagccgatctcctttgggttctggg 469

                                                                       
Query: 181 ttgtggcatagcatccaatgaacataagacagtgctctcaggtgctctggtggaaacatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 ttgtggcatagcatccaatgaacataagacagtgctctcaggtgctctggtggaaacatc 409

                                                                       
Query: 241 tagtaagcaatctaaactgctgtaactggctgacaactgggagccggctattccagaagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 tagtaagcaatctaaactgctgtaactggctgacaactgggagccggctattccagaagg 349

                                                                       
Query: 301 aagccactgggacctcaggagagactcttcccatgtcccgggatagcaagattattagtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 aagccactgggacctcaggagagactcttcccatgtcccgggatagcaagattattagtt 289

                                                                       
Query: 361 taaatactgtggaatcaccattcttcagaaacagtgcgtgcctgaactaagactaacctc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 taaatactgtggaatcaccattcttcagaaacagtgcgtgcctgaactaagactaacctc 229

                                       
Query: 421 tactatgtggattcatctttctggatga 448
           ||||||||||||||||||||||||||||
Sbjct: 228 tactatgtggattcatctttctggatga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 848
Length adjustment: 10
Effective length of query: 438
Effective length of database: 838
Effective search space:   367044
Effective search space used:   367044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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