BAC Information

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BAC

Clone NameMSMg01-403F19
Chromosome4 (Build37)
Map Location 144,695,838 - 144,878,824
singlet/doubletdoublet
Overlap geneVps13d, Tnfrsf1b, Tnfrsf8
Upstream geneLOC100041077, LOC100041144, Oog3, Oog2, C87977, Pramel5, LOC666150, LOC626995, OTTMUSG00000010537, EG627009, Pramef12, D530049N12Rik, 1700012P22Rik, Aadacl3, 9430007A20Rik, LOC100041232, LOC666194, LOC627085, LOC666215, LOC435815, Gm436, LOC546849, Gm438, LOC666242, LOC676844, Dhrs3
Downstream geneLOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084, LOC666386, LOC666390, LOC100041433, LOC433790, LOC433791
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-403F19.T7 (MSMg01no403_f19.b1)MSMg01-403F19.TJ (MSMg01no403_f19.g1)
ACCAG502290AG502291
length773788
length of high quality
(start - end)
452 (69 - 520)442 (70 - 511)
definitionCHROMAT_FILE: MSMg01no403_f19.b1 PHD_FILE: MSMg01no403_f19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:37 2005CHROMAT_FILE: MSMg01no403_f19.g1 PHD_FILE: MSMg01no403_f19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(144,878,434 - 144,878,824)(144,695,838 - 144,696,279)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCA
GTTTGTCCTCTATCAGAATTTTCTGGGACGTTGGAACACTGGCGAAGGCT
TAGCTATGTCAGAATTCAATCTTAAAAGGCACTTATAATAAAATAATACT
AAAAGAGAGCACGTGGATCCATACACCAGACTAACACGGGGATAGGGTAT
CAGTATACGGGTTATGAGAGTAACCGTTGCCAGAGTTCCAGGAGGTGAGT
TTCCGTGAAACTCTTTGCCTCGTGAGTGCTTCCAGGCCTCTCAGCCTGCC
AAGCAGACTTCTCTGTAGCGTGCATAGCAGAACCCATGGTACCATAGCCT
CTCCAGTTTGATGCTTTAAAGCACAACCCTCATGGCCTTTGTCACTTGTA
GCCAGGAATTGTGTGTTATGGAAGACTCCCACTCACTACTTTCCACTACC
TCCCAACTGCCTCCCACTGTTCCCCACTGCAGACTGGATATTCAAACTCT
CTGCACTGATTCTAATATGTCATCATACCTATAGGTAATGCCGAGAAGAA
TATGACCTTGGAGCTTCCATCTCCAGGGACACTTCCTGACATCAGCACCT
CAGAAAACAGCAAGGAGCCTGTCAGGTGACTCCCTAGCCCCCCACCCCAT
GTGTAGGGTAGAATGAGCCCTTTGTTGCTCCCTGCATGTCCACGAAATTA
AGGGTCTTATTTGCCTGCGCCTTATACCCTCTTCTTTTTTGGGAAGTCGG
GGAAAAACCGGCTTTTTTGCCTT
ACTGTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCATAAATTAAGAAGGGAGATGGAAAAAGATA
AAAGGTTCATATCAAATAATATCAATTCATAACAAAAACTTTTACTGAGT
GCTTCCTTACATACTGGACCCATGCAAGAAGCTAAAAAAGGTTGAACCCT
AGAGACAACAATTGCACAAGGAAGAGATCAAGGCAATCAGATGACCTACC
TTCATAAAGTCACCTATGATGTGAAAGGCTAAAGGAAAGACAGAATTACA
ATGCTGGAGGGCAGAGAAGAAGGTCAGATTTATTTGGCTTTGACAAAAGC
AGGTGGTGGTGATGTGTGCATTAAAGTCCCTCTTGAAATGTGAATAGCAA
CTCAATGAAACTGAGGGCAGAGTGATACTCTAGGCAATGGGACTCTCGGG
TGCAAAGACTAAGACATTAAGTACACAGCACACTCACGAACACTGACTGC
TGTGCTGTATCTTCAGTGCACATTCTGCATGAGAGACGTGCCACAGATAT
CCAGAATCCAGAAATGCACATTTCACGGCCTACCAAAAACTGTGATAACA
CCTTGCTCTGTTTTGGCAATTTTCAGAATAAAACCTGGTGCTATAATCGA
TGCAACAAATCACCACAAGTAACGTTATCCCTCCTCCCCATTGTCACCTC
CCCCCCCTTACCCTGCCACTGGTTGTTCATCTTCTTTATCGCCCACTCAC
TCTTCCTAATTCCATCCCCTGATATCCCCTTCCCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no403_f19.b1 MSMg01no403_f19.b1 CHROMAT_FILE:
MSMg01no403_f19.b1 PHD_FILE: MSMg01no403_f19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:37 2005
         (452 letters)



>mm_chr4_144877973_144878824
          Length = 852

 Score =  741 bits (383), Expect = 0.0
 Identities = 389/391 (99%)
 Strand = Plus / Minus

                                                                       
Query: 62  cacttataataaaataatactaaaagagagcacgtggatccatacaccagactaacacgg 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 852 cacttataataaaataatactaaaagagagcacgtggatccatacaccagactaacacgg 793

                                                                       
Query: 122 ggatagggtatcagtatacgggttatgagagtaaccgttgccagagttccaggaggtgag 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 ggatagggtatcagtatacgggttatgagagtaaccgttgccagagttccaggaggtgag 733

                                                                       
Query: 182 tttccgtgaaactctttgcctcgtgagtgcttccaggcctctcagcctgccaagcagact 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 tttccgtgaaactctttgcctcgtgagtgcttccaggcctctcagcctgccaagcagact 673

                                                                       
Query: 242 tctctgtagcgtgcatagcagaacccatggtaccatagcctctccagtttgatgctttaa 301
           || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 tcactggagcgtgcatagcagaacccatggtaccatagcctctccagtttgatgctttaa 613

                                                                       
Query: 302 agcacaaccctcatggcctttgtcacttgtagccaggaattgtgtgttatggaagactcc 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 agcacaaccctcatggcctttgtcacttgtagccaggaattgtgtgttatggaagactcc 553

                                                                       
Query: 362 cactcactactttccactacctcccaactgcctcccactgttccccactgcagactggat 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 cactcactactttccactacctcccaactgcctcccactgttccccactgcagactggat 493

                                          
Query: 422 attcaaactctctgcactgattctaatatgt 452
           |||||||||||||||||||||||||||||||
Sbjct: 492 attcaaactctctgcactgattctaatatgt 462


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 852
Length adjustment: 10
Effective length of query: 442
Effective length of database: 842
Effective search space:   372164
Effective search space used:   372164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no403_f19.g1 MSMg01no403_f19.g1 CHROMAT_FILE:
MSMg01no403_f19.g1 PHD_FILE: MSMg01no403_f19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:37 2005
         (442 letters)



>mm_chr4_144695638_144696479
          Length = 842

 Score =  847 bits (438), Expect = 0.0
 Identities = 441/442 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cataaattaagaagggagatggaaaaagataaaaggttcatatcaaataatatcaattca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cataaattaagaagggagatggaaaaagataaaaggttcatatcaaataatatcaattca 260

                                                                       
Query: 61  taacaaaaacttttactgagtgcttccttacatactggacccatgcaagaagctaaaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taacaaaaacttttactgagtgcttccttacatactggacccatgcaagaagctaaaaaa 320

                                                                       
Query: 121 ggttgaaccctagagacaacaattgcacaaggaagagatcaaggcaatcagatgacctac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggttgaaccctagagacaacaattgcacaaggaagagatcaaggcaatcagatgacctac 380

                                                                       
Query: 181 cttcataaagtcacctatgatgtgaaaggctaaaggaaagacagaattacaatgctggag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttcataaagtcacctatgatgtgaaaggctaaaggaaagacagaattacaatgctggag 440

                                                                       
Query: 241 ggcagagaagaaggtcagatttatttggctttgacaaaagcaggtggtggtgatgtgtgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggcagagaagaaggtcagatttatttggctttgacaaaagcaggtggtggtgatgtgtgc 500

                                                                       
Query: 301 attaaagtccctcttgaaatgtgaatagcaactcaatgaaactgagggcagagtgatact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attaaagtccctcttgaaatgtgaatagcaactcaatgaaactgagggcagagtgatact 560

                                                                       
Query: 361 ctaggcaatgggactctcgggtgcaaagactaagacattaagtacacagcacactcacga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 561 ctaggcaatgggactctcgggtgcaaagactaagacattaagtacacagcacactcagga 620

                                 
Query: 421 acactgactgctgtgctgtatc 442
           ||||||||||||||||||||||
Sbjct: 621 acactgactgctgtgctgtatc 642


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 842
Length adjustment: 9
Effective length of query: 433
Effective length of database: 833
Effective search space:   360689
Effective search space used:   360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)