BAC Information

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BAC

Clone NameMSMg01-403L23
Chromosome4 (Build37)
Map Location 43,268,768 - 43,447,216
singlet/doubletdoublet
Overlap geneUnc13b, 4930417M19Rik, Rusc2, 4833436C18Rik
Upstream geneLOC100039193, LOC100039374, LOC100039930, LOC100038993, LOC100039939, Ccl19-ps3, Ccl21c, LOC100039323, LOC665845, LOC100039973, LOC100039986, 4933409K07Rik, LOC100039344, LOC100039995, EG623054, Ccl19-ps2, LOC100039331, LOC100039131, LOC100040035, LOC100040048, Il11ra2, LOC665962, LOC545614, 1700008B15Rik, Ccl19, Ccl21b, LOC100039205, LOC433698, BC049635, N28178, Dnajb5, 1700022I11Rik, Vcp, Fancg, Pigo, Stoml2, B230312A22Rik
Downstream geneTesk1, Cd72, Sit1, Rmrp, LOC622404, E130306D19Rik, Car9, Tpm2, Tln1, Creb3, Gba2, 1110029E03Rik, LOC100039672, LOC100040179, Npr2, Spag8, Hint2, Serf2-ps, 4930412F15Rik, Olfr70, Olfr71, LOC100039781, 5430416O09Rik, A630077J23Rik, GA_x5J8B7W5BNN-892919-892147, Olfr159, Olfr29-ps1, Olfr156, LOC100040268, Olfr155, Reck, Glipr2, Ccin, Clta, Gne, LOC100040313, OTTMUSG00000007209, Rnf38, Melk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-403L23.T7 (MSMg01no403_l23.b1)MSMg01-403L23.TJ (MSMg01no403_l23.g1)
ACCAG502585AG502586
length782791
length of high quality
(start - end)		505 (62 - 566)463 (71 - 533)
definitionCHROMAT_FILE: MSMg01no403_l23.b1 PHD_FILE: MSMg01no403_l23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:09 2005CHROMAT_FILE: MSMg01no403_l23.g1 PHD_FILE: MSMg01no403_l23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:09 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,268,768 - 43,269,272)(43,446,754 - 43,447,216)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATCCGCGGAATTCCTT
CGTGTTTCCTTGGAACGAGATAAGAAGGATGGGGTAAGTTGGGGACTTTA
GCCACATAGTGATCAGTTGGGTCTCGGCATTCAGCTATTGGCCAGAAGTT
TTGAGATTCTGCTAGGCTGATCTACCCTGTCCTAAACAATCTGTAGAAAA
GCTATGGAGAGCATGGAGCCACCCATGCTAGGCAGACCTCTTTCAAACCC
TAAAGCTGGGTATGGATGGTTATTCCATGTGTGGTCTTCCTTAGTTCCAA
CAGACATCAGAGCATGCCTTGTTTTCCTGTTCTGTGGTGGATGTCTTTAC
ACAACTCAACCAGAGCTTTGAGATCATCCGGAAGTTGGAATGTCCAGACC
CCAACATCCTTGCCCACTACATGAGAAGGTTTGCTAAGGTAATAATGGAC
CTCCTGGGCCCTTGCCCCTTCATACCACCACACTCACAGTTAGTCATAGG
CCTGTGTTCTACCCTCTTCTATGGTGGCCTTCTAGTAAAGCCTTATATTA
CCTACTTCCCCTTTGCTGTGTTTTAAGCAGACTGATAGTCTGTCTCAGTT
CTGCTCTGCAGTTGAGAGGAAATTTGCTCCCTCCTATGAAGCCCTCCTTG
CCTTCTTGAAATTTTAAGGGTAGGGTCTGGCCTGGCTCCCATAATTTGCG
ACCCCCCCTCGTTGTTATTACCCCGGTGTTTTTATAACTCCTATTTTCTC
TCAACCGGGCTGCACTCCGCTTATTTCCCCTG

ATGTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCCTCTGGGAGTTGGCAGGACTGCAAGGCGG
GTTCTGGTTGGCAGCAAACGCTGACTTCTTATTCCGGTCCTTTCCTGTTA
GCGGCTGTGCTCCTGAGTCCTTAGGCTGTAGGCTATTCCTTCCTATGCTC
GCTGCCATGATCAGCTGAGATCAGAGAAACCACAAACAAAAGAGATCCTT
CCTCCAAGATGTCTCTGCCAGGCACTTGGGGAAGAAAAGGCTGTGTGTAG
CTGCTTTTGGTGTCTCCAGCTCACAACATGTCTGCCCAGTCTCCAGTGAT
CCAAGCTAAGCTCAAGACAGACTGTTTACATAGGTGGTGGTCAGGAGAGC
GTATTCTAAACAAGGACATATGAAGTGATTTTCTAATGTTACACCAAGAT
GTCACTCACAGCTAAGCCTAGTATTATGTGTTAGGTCTCAAACCTGGGAC
AAGTGGTTGAGGAGCTGGCAGCCTGGTTTCCCTGCATCCCTGTCACAGGG
CCTTCCTGACTGGCATGTCCTGGCTTCCCCTGAACTCTCTACCCTAAGAG
GTCGGGCGGCTCCGTTCTATTGTATCCCCTTATTTCGTTAGCTGCTCCCC
TTTGGGCCCTTCGTTGCTTGCCCCTGGGTACCCCTCTCCCCTTTCTCTTT
TCCCCCCCCATGGGGTGTCTTCGTTTCCACTCCCTTTTTTGCCTCTCTTT
GAACCCTCCCCGTTCTTCTACTATATTTCCTCTCCCCCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no403_l23.b1 MSMg01no403_l23.b1 CHROMAT_FILE:
MSMg01no403_l23.b1 PHD_FILE: MSMg01no403_l23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:09 2005
         (505 letters)



>mm_chr4_43268568_43269472
          Length = 905

 Score =  953 bits (493), Expect = 0.0
 Identities = 502/505 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggaacgagataagaaggatggggtaagttggggactttagccacatagtgatcagttggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggaacgagataagaaggatggggtaagttggggactttagccacatagtgatcagttggg 260

                                                                       
Query: 61  tctcggcattcagctattggccagaagttttgagattctgctaggctgatctaccctgtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctcggcattcagctattggccagaagttttgagattctgctaggctgatctaccctgtc 320

                                                                       
Query: 121 ctaaacaatctgtagaaaagctatggagagcatggagccacccatgctaggcagacctct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctaaacaatctgtagaaaagctatggagagcatggagccacccatgctaggcagacctct 380

                                                                       
Query: 181 ttcaaaccctaaagctgggtatggatggttattccatgtgtggtcttccttagttccaac 240
           |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct: 381 ttcaaaccctaaagctgggtatggatggttattccatgtgtggtgttccttagttccagc 440

                                                                       
Query: 241 agacatcagagcatgccttgttttcctgttctgtggtggatgtctttacacaactcaacc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agacatcagagcatgccttgttttcctgttctgtggtggatgtctttacacaactcaacc 500

                                                                       
Query: 301 agagctttgagatcatccggaagttggaatgtccagaccccaacatccttgcccactaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agagctttgagatcatccggaagttggaatgtccagaccccaacatccttgcccactaca 560

                                                                       
Query: 361 tgagaaggtttgctaaggtaataatggacctcctgggcccttgccccttcataccaccac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 561 tgagaaggtttgctaaggtaataatggacctcctgggcccttgccccttcacaccaccac 620

                                                                       
Query: 421 actcacagttagtcataggcctgtgttctaccctcttctatggtggccttctagtaaagc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 actcacagttagtcataggcctgtgttctaccctcttctatggtggccttctagtaaagc 680

                                    
Query: 481 cttatattacctacttcccctttgc 505
           |||||||||||||||||||||||||
Sbjct: 681 cttatattacctacttcccctttgc 705


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space:   443025
Effective search space used:   443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no403_l23.g1 MSMg01no403_l23.g1 CHROMAT_FILE:
MSMg01no403_l23.g1 PHD_FILE: MSMg01no403_l23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:09 2005
         (463 letters)



>mm_chr4_43446554_43447416
          Length = 863

 Score =  833 bits (431), Expect = 0.0
 Identities = 455/463 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctctgggagttggcaggactgcaaggcgggttctggttggcagcaaacgctgacttctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 cctctgggagttggcaggactgcaaggcgggttctggttggcagcaaacgctgacttctt 604

                                                                       
Query: 61  attccggtcctttcctgttagcggctgtgctcctgagtccttaggctgtaggctattcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 603 attccggtcctttcctgttagcggctgtgctcctgagtccttaggctgtgggctattcct 544

                                                                       
Query: 121 tcctatgctcgctgccatgatcagctgagatcagagaaaccacaaacaaaagagatcctt 180
           |||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct: 543 tcctatgctcactgccatgatcggctgagatcggagaaaccacaaacaaaagagatcctt 484

                                                                       
Query: 181 cctccaagatgtctctgccaggcacttggggaagaaaaggctgtgtgtagctgcttttgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 cctccaagatgtctctgccaggcacttggggaagaaaaggctgtgtgtagctgcttttgg 424

                                                                       
Query: 241 tgtctccagctcacaacatgtctgcccagtctccagtgatccaagctaagctcaagacag 300
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 tgtctccagctcacttcatgtctgcccagtctccagtgatccaagctaagctcaagacag 364

                                                                       
Query: 301 actgtttacataggtggtggtcaggagagcgtattctaaacaaggacatatgaagtgatt 360
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 363 actgtttacataggtggtggtcaggagagcgtattctaaacaaagacatatgaagtgatt 304

                                                                       
Query: 361 ttctaatgttacaccaagatgtcactcacagctaagcctagtattatgtgttaggtctca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 ttctaatgttacaccaagatgtcactcacagctaagcctagtattatgtgttaggtctca 244

                                                      
Query: 421 aacctgggacaagtggttgaggagctggcagcctggtttccct 463
           |||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 243 aacctgggacaagtggctgaggagctggcagcctggtttccct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 863
Length adjustment: 10
Effective length of query: 453
Effective length of database: 853
Effective search space:   386409
Effective search space used:   386409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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