GCGTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAAC
TATTTTCCAACAAGTAGGTGTTAGGTTCAGATTGAGTCTTTTATTTAATA
ACTGCAGAGTCTTAGATAATTTCATCTTGAATTAGTCCAAAGATATCTCT
TTATTCTGTAACTTGAGAAAAAATTTACCTGTTATAATAAAATTAGATTG
TGTATATATAATTTTAAAGGTATTGTATAGCTGTAGCAAGCCTCCCATAA
ATGCATTTCTATTTAGTTCTTCAAAGACTCACAGTAAACCATTCAAAAGT
TAAACAAGGTGGGCTGGTGTCATGATACTGGCAATCAGGCTATCAGCAAA
CAGACCTGTGTAAGGACCTAGATATTCTGTTTTACAATAGATTTAGAGAG
AGAGAATTTGCTCTCCATATAAAATAATTTCATCTAGATCCAGTCATATT
GAATATTAACACAAATCATCTCAATTTAGAATAAAATCAAAAAATCATTT
CTGCTAATCTGATAACAGAGGAATAAAAGATAATCAGGACAGATACAATA
TTATGCACAGCCACCATCTAAAAAGAAAAAATTCTGTTCTGTTAAAATTT
GTCCAAAATTCATCTTAGGAGCTCTAGTAAACTTTGTGGAAAATGTGCCT
CTCTAATTCTAATTATTATTTATTTGTCCTATATTTTCCAGACTAGTATA
ATATTTAAAAGGCCTTTTTCCCCCCCTCATTGAATAACAGGACAGGTATA
C

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGAGCCCCATTTTTAATGGGG
TTCTTTGATTTTTCTGGAGTCTACCTTCTTGAGTTCTTTATATATATTGG
ATATAAGTCCCCTATCTGATTTAGGATTGGTAAAGATCCTTTCCCAATTT
GTTGGTGGCCTTTTAATTGCTCACAAAAGATGTTAACTGGTTAATTTAAA
ATAGAAAAATAATTTATTAAAAGGATGGTATATATTACCAGGTATTAGAG
GATTTTATTTATTTACTTTTGTGTTTATTACATGTTTGTACATTTTTATT
ATTTAATGTTTTCTTTTTTATTAGATATTTTCTTTATTTATTCCTAATTT
CCCCTCTGAAAATCCCCCCTTCCTCTCCCCCTCCCCCTGATCCCCAACCA
ACCCACTCCTGCTTCCTGGCCTTGGCATTCCCCTATAGTGTGACAAAGAA
CCTTCACAGGACCAAATGTCTCTCCTCACATTGATGACCAACTAGGCCAT
CCTCTGTTACATATGCAGCTTGAGCCCCATGTCCCACCATGTTGTTTTTT
TTTGATTGTTGGCTTACTTTCTATAAAACTCATGGGTTATTTTTTTATTT
TCTATTTGGTAACTCCCCCCCACTGTTTTTGTCAACTCCCCCTCTTCTCC
CTTGGGTTATTTTATAGGATTTACCCTTTCTGGTTGTACACCGTGTTATT
CCTCCTTATTAAAATGTATTGTATAN

Query= MSMg01no404_a06.b1 MSMg01no404_a06.b1 CHROMAT_FILE:
MSMg01no404_a06.b1 PHD_FILE: MSMg01no404_a06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:31 2005
         (509 letters)



>mm_chr4_23911898_23912807
          Length = 910

 Score =  955 bits (494), Expect = 0.0
 Identities = 506/510 (99%), Gaps = 1/510 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   caagtaggtgttaggttcagattgagtcttttatttaataactgcagagtcttagataat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caagtaggtgttaggttcagattgagtcttttatttaataactgcagagtcttagataat 260

                                                                       
Query: 61  ttcatcttgaattagtccaaagatatctctttattctgtaacttgagaaaaaatttacct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcatcttgaattagtccaaagatatctctttattctgtaacttgagaaaaaatttacct 320

                                                                       
Query: 121 gttataataaaattagattgtgtatatataattttaaaggtattgtatagctgtagcaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttataataaaattagattgtgtatatataattttaaaggtattgtatagctgtagcaag 380

                                                                       
Query: 181 cctcccataaatgc-atttctatttagttcttcaaagactcacagtaaaccattcaaaag 239
           |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctcgcataaatgccatttctatttagttcttcaaagactcacagtaaaccattcaaaag 440

                                                                       
Query: 240 ttaaacaaggtgggctggtgtcatgatactggcaatcaggctatcagcaaacagacctgt 299
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttaaacaaggtgggctggtgccatgatactggcaatcaggctatcagcaaacagacctgt 500

                                                                       
Query: 300 gtaaggacctagatattctgttttacaatagatttagagagagagaatttgctctccata 359
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 501 gtaaggacctagatattctgttttacaatagctttagagagagagaatttgctctccata 560

                                                                       
Query: 360 taaaataatttcatctagatccagtcatattgaatattaacacaaatcatctcaatttag 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taaaataatttcatctagatccagtcatattgaatattaacacaaatcatctcaatttag 620

                                                                       
Query: 420 aataaaatcaaaaaatcatttctgctaatctgataacagaggaataaaagataatcagga 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aataaaatcaaaaaatcatttctgctaatctgataacagaggaataaaagataatcagga 680

                                         
Query: 480 cagatacaatattatgcacagccaccatct 509
           ||||||||||||||||||||||||||||||
Sbjct: 681 cagatacaatattatgcacagccaccatct 710


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 910
Length adjustment: 10
Effective length of query: 499
Effective length of database: 900
Effective search space:   449100
Effective search space used:   449100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)