BAC Information

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BAC

Clone NameMSMg01-404D18
Chromosome4 (Build37)
Map Location 136,563,758 - 136,711,136
singlet/doubletdoublet
Overlap geneZbtb40
Upstream geneTceb3, Rpl11, Id3, E2f2, Ddefl1, Tcea3, Zfp46, Hnrpr, Htr1d, LOC100042540, Luzp1, Aof2, LOC667080, LOC433770, 4930549C01Rik, BC029684, Ephb2, C1qb, C1qc, C1qa, Epha8
Downstream geneWnt4, Cdc42, LOC665533, LOC242711, Ela3, 1700013G24Rik, Hspg2, Ldlrad2, Usp48, Rap1gap, Akp2, Ece1, LOC100040558, Eif4g3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-404D18.T7 (MSMg01no404_d18.b1)MSMg01-404D18.TJ (MSMg01no404_d18.g1)
ACCAG502955AG502956
length748775
length of high quality
(start - end)		528 (39 - 566)246 (70 - 315)
definitionCHROMAT_FILE: MSMg01no404_d18.b1 PHD_FILE: MSMg01no404_d18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:49 2005CHROMAT_FILE: MSMg01no404_d18.g1 PHD_FILE: MSMg01no404_d18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(136,563,758 - 136,564,281)(136,710,894 - 136,711,136)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTC
TGGAATGCTGAACTGCCTCCTTCACTCGTGAGACATTCTATTATGGTCTG
TGAACCAAGCACATACACACAGATTAATTGCCTCCAAGAACTCCTGTGTG
GCGTGAGGGCTCTGACATCTTGACCCTCACACCTCTCCATTAATCTTTAC
CCATGGCACCAGCTTATAAACAGAGCAACTGAACCAGCTCCACCTCTGGG
GACCACGCCCATCCTCCATCCTTCCCTAGGGTCCCACAGCCCTCCTCCTC
CTCTGCACTGGACACACATGCTGTGACTGATTCATTACTGCTTTCTACAC
TGACACTTTTAGAAGGCAGCAATCTCGCTTCTAGGGCTCTACAGCCTCAG
CAAGAAGCACAGCCTGGCACATAGTAGGTGTACAGGATATTTTTAACAAA
TGCAATGCACTTCTCACCTAATTATACCTTTCTGAATCTTATGACACTGG
GTATTTCTCAGGCAAGGATATCTGAATTTCAAATGGAATGAACTGTCATT
TTACTATTTGAGAATGCAATTAAAATCCGCGAGTTAGGAAAAAAGAACAC
TTTAAGTCATTTACATTCTGAATGATAGACCATTTTTAAAGACATGGGCC
CTATTAAATTAGCTATACTCCGGAATAAGGTAAAAATGGGTTTGGTTTAA
AAGGGCCCCCTGTCCAAAAAAATGATCCTCTTCCTAATTACCCCACGN

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAACTCAACCCAACGGTTTCCCAGGACTCCTA
GGGACAGAGAAATGGCCGCTGGTATAGAAACCTCCACAGAGATGGAGCTT
TCCCAGGTGGTCCTTCAAACTGTCCTGGCCATTAGATGATCCTTCCAGAC
ACCAAAGAGTGGGGCATGGACTATCTATTGTGTGGGGAGGGTTGGAGGAA
GTCACAGAAGCTGTGGATAACCCTGGGATTGGATGATGAGAGTGGGTATT
CATTGTGATGGGTTTTTTTTTTGGNCAACTGCTATGCAGAAGTCTGGGAA
GTCATTTCTACCTCTGGGGAAGAGGTATCTGCATGACTATAGATGATGTG
TCAATTTTCCCTGTTATTTTCTGTTTTCCGAGTTTCTTTTATGCCTCTAT
GCTTTTTTTTTTCTCTTCTTTTTCCGCTTTTCTTTTATTTATCCCCCTCT
TTATAATTCCCCTTCTCTAATTCCCATTTTTCCTCTTTATTTCGCGTTTT
CTTCTATTACCCCCCTTATTTATTCTTTTTTCTTCCTCTTTTTTTATCAG
TTCTCCCGCCTTTTACTCCTTTTTTTATTACCTCCCTCCGCTCCCACATA
TATTTAATTACCCCTGCACCCTCCTATTTTATTGTTCTTAATATTAAGTT
TTTCCGATCTCGCTTATTCTATTTATTTTACCCCCTCTCATTTATATCAT
ACTACTATTTCCCCCCTTTCTCATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no404_d18.b1 MSMg01no404_d18.b1 CHROMAT_FILE:
MSMg01no404_d18.b1 PHD_FILE: MSMg01no404_d18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:49 2005
         (528 letters)



>mm_chr4_136563554_136564481
          Length = 928

 Score = 1006 bits (520), Expect = 0.0
 Identities = 523/524 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctggaatgctgaactgcctccttcactcgtgagacattctattatggtctgtg 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctggaacgctgaactgcctccttcactcgtgagacattctattatggtctgtg 264

                                                                       
Query: 65  aaccaagcacatacacacagattaattgcctccaagaactcctgtgtggcgtgagggctc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaccaagcacatacacacagattaattgcctccaagaactcctgtgtggcgtgagggctc 324

                                                                       
Query: 125 tgacatcttgaccctcacacctctccattaatctttacccatggcaccagcttataaaca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgacatcttgaccctcacacctctccattaatctttacccatggcaccagcttataaaca 384

                                                                       
Query: 185 gagcaactgaaccagctccacctctggggaccacgcccatcctccatccttccctagggt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gagcaactgaaccagctccacctctggggaccacgcccatcctccatccttccctagggt 444

                                                                       
Query: 245 cccacagccctcctcctcctctgcactggacacacatgctgtgactgattcattactgct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cccacagccctcctcctcctctgcactggacacacatgctgtgactgattcattactgct 504

                                                                       
Query: 305 ttctacactgacacttttagaaggcagcaatctcgcttctagggctctacagcctcagca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttctacactgacacttttagaaggcagcaatctcgcttctagggctctacagcctcagca 564

                                                                       
Query: 365 agaagcacagcctggcacatagtaggtgtacaggatatttttaacaaatgcaatgcactt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agaagcacagcctggcacatagtaggtgtacaggatatttttaacaaatgcaatgcactt 624

                                                                       
Query: 425 ctcacctaattatacctttctgaatcttatgacactgggtatttctcaggcaaggatatc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ctcacctaattatacctttctgaatcttatgacactgggtatttctcaggcaaggatatc 684

                                                       
Query: 485 tgaatttcaaatggaatgaactgtcattttactatttgagaatg 528
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tgaatttcaaatggaatgaactgtcattttactatttgagaatg 728


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 928
Length adjustment: 10
Effective length of query: 518
Effective length of database: 918
Effective search space:   475524
Effective search space used:   475524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no404_d18.g1 MSMg01no404_d18.g1 CHROMAT_FILE:
MSMg01no404_d18.g1 PHD_FILE: MSMg01no404_d18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:49 2005
         (246 letters)



>mm_chr4_136710694_136711339
          Length = 646

 Score =  470 bits (243), Expect = e-137
 Identities = 243/243 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aactcaacccaacggtttcccaggactcctagggacagagaaatggccgctggtatagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 aactcaacccaacggtttcccaggactcctagggacagagaaatggccgctggtatagaa 384

                                                                       
Query: 61  acctccacagagatggagctttcccaggtggtccttcaaactgtcctggccattagatga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 acctccacagagatggagctttcccaggtggtccttcaaactgtcctggccattagatga 324

                                                                       
Query: 121 tccttccagacaccaaagagtggggcatggactatctattgtgtggggagggttggagga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tccttccagacaccaaagagtggggcatggactatctattgtgtggggagggttggagga 264

                                                                       
Query: 181 agtcacagaagctgtggataaccctgggattggatgatgagagtgggtattcattgtgat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 agtcacagaagctgtggataaccctgggattggatgatgagagtgggtattcattgtgat 204

              
Query: 241 ggg 243
           |||
Sbjct: 203 ggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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