XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCATT
GTATACCAGGCTGGCCTCAAACTCAGAAATCTGCCTGTCTCTGCCTCCCG
AGTGCTGGGATTAAAGGCATGTGCCACCATGCCCATCTACCATCTCATAG
TCTTTATTTGATAATTTCTTCTCTTGCAGCCTAAACTGATCTGATACTAA
TCACCAATGTTCTAGCAAAAGTGAATTTCAAAGCACAGCACAGTATGGCT
GTTGTTATTGTTTTCCTGGTTTACCAACAGCTTCAAGATTTTAAGTAGCT
TTGTTACCTAATACAGTATGTCATGCAGGTGTACTAGTATCTTTTCAGTA
CATACCCTAATTGCAAATATGTTAATATTTTTATTTCCATGAGTTAAATA
GCCCTCTGAAAGTAACCCCAGGATCATTTTATATATATCTACATAAGTGA
AGGATGTAGAGAAATAACTCATGTGAGGAATAGAATATTCGTTTGACAGA
CTTGCCAATGAGCTCTCAGAATCTAACTTATTCATAAATCAGAGAGCTCC
CATCTATCAAGAACTTTGATATACTACCTTATGTCTCTACCACACCCACA
GTACAAGCATCTTTACTTTAGCCCCAGCCAGTTCATGCAGGTGAATTCCA
AAAACTCTCACTTCCCAAGCCCTTCTTTTATGGCTCTGTTGTCACAGTTG
CTGAGCTGGGATACCCGTTAAATGCTCATCCCTAGAGCAACCCGG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCAGGGAGAATGGACCGCACCAGCTCCTGAGTTCA
CTGCTGCTCAGCCTGAGGTGGCCGACTGGTCTGAGGCTGTGTAGGTTCCC
TCTGTGCCCATCCAGCAGTTCCCCACGGAAGACTGGAGTGCGCAGCCAGC
CACTGAGGACTGGTCAGCGTCTCCCACAGCAAAGACCACTGAGTGGGTTG
AAGCTACCACTGAGTGGTCCTGAGCTGCTGTGCAGGCACCTGAGCAAAGG
AAAACGGTGGAAGGAAAATAAAGTTCCTACAAGCTGAAGAAAAAAAAAAC
AGAATTAAAAAAAAAACAGAATAAGTATGGTTGAGTATTATCGATAGAAC
CAAGTGCTGTCCATCCTTCTCGTCCTGTCCAAAGAGTACATGTGTGGTTC
TGAGGGTTAGAGTTTTGGACTGATGCTGAAATATGATCGCTTATGAGGTA
GACATAGAAATAAAATGTTAAACATTTGCATCTTTATAAACTCACAAAAG
CTTCAACTTTTAGGTCCTTTTTATACCAGCTAACTGATTAATAAGTACAA
ATGCAGCTGAAAGACAAACTGGAGACAGAAACTTATTCTGGAGCTGTTGA
GTGCCTGCAATTTCTGGTTCCCCCTGGCCCCCAAGATAGCCCTTAGATCC
CCCAAAAATTAACTATGCTTACTTTTCCTGGACATTTATTTATTTTTTCC
CAAA

Query= MSMg01no404_f01.b1 MSMg01no404_f01.b1 CHROMAT_FILE:
MSMg01no404_f01.b1 PHD_FILE: MSMg01no404_f01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:56 2005
         (588 letters)



>mm_chr4_14303518_14304505
          Length = 988

 Score = 1116 bits (577), Expect = 0.0
 Identities = 583/585 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctcattgtataccaggctggcctcaaactcagaaatctgcctgtctctgcctcc 63
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 884 ggaattctcattgtagaccaggctggcctcaaactcagaaatctgcctgtctctgcctcc 825

                                                                       
Query: 64  cgagtgctgggattaaaggcatgtgccaccatgcccatctaccatctcatagtctttatt 123
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 824 cgagtgctgggattaaaggcatgcgccaccatgcccatctaccatctcatagtctttatt 765

                                                                       
Query: 124 tgataatttcttctcttgcagcctaaactgatctgatactaatcaccaatgttctagcaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 tgataatttcttctcttgcagcctaaactgatctgatactaatcaccaatgttctagcaa 705

                                                                       
Query: 184 aagtgaatttcaaagcacagcacagtatggctgttgttattgttttcctggtttaccaac 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 aagtgaatttcaaagcacagcacagtatggctgttgttattgttttcctggtttaccaac 645

                                                                       
Query: 244 agcttcaagattttaagtagctttgttacctaatacagtatgtcatgcaggtgtactagt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 agcttcaagattttaagtagctttgttacctaatacagtatgtcatgcaggtgtactagt 585

                                                                       
Query: 304 atcttttcagtacataccctaattgcaaatatgttaatatttttatttccatgagttaaa 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 atcttttcagtacataccctaattgcaaatatgttaatatttttatttccatgagttaaa 525

                                                                       
Query: 364 tagccctctgaaagtaaccccaggatcattttatatatatctacataagtgaaggatgta 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 tagccctctgaaagtaaccccaggatcattttatatatatctacataagtgaaggatgta 465

                                                                       
Query: 424 gagaaataactcatgtgaggaatagaatattcgtttgacagacttgccaatgagctctca 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 gagaaataactcatgtgaggaatagaatattcgtttgacagacttgccaatgagctctca 405

                                                                       
Query: 484 gaatctaacttattcataaatcagagagctcccatctatcaagaactttgatatactacc 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 gaatctaacttattcataaatcagagagctcccatctatcaagaactttgatatactacc 345

                                                        
Query: 544 ttatgtctctaccacacccacagtacaagcatctttactttagcc 588
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 ttatgtctctaccacacccacagtacaagcatctttactttagcc 300


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 988
Length adjustment: 10
Effective length of query: 578
Effective length of database: 978
Effective search space:   565284
Effective search space used:   565284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)