BAC Information

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BAC

Clone NameMSMg01-404F10
Chromosome4 (Build37)
Map Location 80,964,922 - 80,965,160
singlet/doubletsinglet
Overlap geneMpdz
Upstream geneTyrp1, D4Bwg0951e
Downstream geneLOC100040131, LOC100040144, EG668895, LOC100040164, EG545641, Nfib
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-404F10.T7 (MSMg01no404_f10.b1)MSMg01-404F10.TJ (MSMg01no404_f10.g1)
ACCAG503031AG503032
length803777
length of high quality
(start - end)
177 (61 - 237)246 (68 - 313)
definitionCHROMAT_FILE: MSMg01no404_f10.b1 PHD_FILE: MSMg01no404_f10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:58 2005CHROMAT_FILE: MSMg01no404_f10.g1 PHD_FILE: MSMg01no404_f10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGTGGCGTTAAACGAATCCTATTTCAAAAGAATCCGCGGAATTCTACAGT
GTCCGCAGCCATGCAGCCATCTCCATGATTGCTTGACACCAGAGGCAGCA
GAGGATTTAGGGTTTTTTTCAGTGTCTCAGATTTCCTGGAGGTTTTGTAC
CTGGATTTTCCTTTCTTCCTTCCTTCCCTCTTCCCTTCCCTTCCCTTCCC
TTCCCTTCCCTTCCCTTCCCTTCACCCTTCCCTTACCTTCCTTTTTTCCT
TCCCTTCCCTTCCCTTTCTTTTATTTTTTTTCCCCCACCTTTTACCCCTT
CACACACTTTTTTTTTTCTCTATTTCCTTCTCCTATTTTCCCCCTTTTTT
TTTCCTCCCTCCTACTCTTCTCTTTTATCCCTATCCCTTCCACCTTCTTA
ATACACCCCTTTAATTTTCCCCTTTTCATATACCTTCTCATTTTACCTCT
TAATCCCGCCCCAATATTAGATCTTTTTTCCCCCCCTTTTTATTCTCTCT
ACATTTTATACCACCCCCCTTCCTCTTTCTCTTTTTTTTTTTGTCCCATC
TTCTTTTTCTAAATCCCCCCCCTTTTTTTTTTTTTTTTTATCCCTCTCCA
CCTTTCACTTTTATATTTATACTATTATATTTTATTTTATTAATCTCCCC
CCTTTTTTTAATATCTTTTTTTTTTATATCTCCCCCTCCCTTTTTTCCAT
CTCCTCCCCCTTTTATATCACCTCTCCCCCCCCCCCCTCTCTTTATTTAA
TTTTATTCTATTTATTATTATAATCCCCCCCTACCCCTTATCTATTTATT
ATT
TTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCATTCAGGGGACTAATATTTCATTTAATGAGAA
TAGGCCAGGGGTCCTGTTATTTGTTCTCATAGATGGTCACAGGAGAAAGA
AGGAAGGCACAGGTTCCTGTTTCCTCTCAAATGTCAGTCTCTCATTTCTC
AGGCCCAGAGAATGAGTAGATAAATGAATGAATGAGCAATCCACCATAAA
ACATTTTCTTTTCACTTTACATGTCTATGGAGTTAAACCCAGGGCCTTGC
ATGCACTCAGCTATTTTTTAGCCAACAGACTTATTCTAGAGTGGCTGCCA
TGTCCTAGAGAACCTTGTTAACCAGGAAAGCAATTTAATGTCAAGTCTAT
GGACTGAGAAAATGAGATAAGCACTCGTTTAAAGTAAACAAAATGTCCAT
TACATTCACAAATGTTTTAACAGTCTCTCCTTCCCTTTTATTCTAAGTTA
GGAACATGAGGTCAGACTCCCTCTTCTCAACATCTTAAGTCCAATTGTGG
CTATTCTGACCAAATGAATTTTATGTTTTGCTCCCTGGTTCTTTCGTCTA
CCCCTTTTTTTTTCTTTCTTTTATTATTCCATCCCTCCCTCTTTTTTATA
TTAATACTTTAATTTTTTCTTTTAAATTTCTATATTATTTTCTTTTTTCC
CCGTTACCCTCCTTCATCTATATTACTATTCGCTTTTCTTATTTTCTCTT
TTTACTTCCTCTCCCTCCTTCCCTTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no404_f10.g1 MSMg01no404_f10.g1 CHROMAT_FILE:
MSMg01no404_f10.g1 PHD_FILE: MSMg01no404_f10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:58 2005
         (246 letters)



>mm_chr4_80964722_80965367
          Length = 646

 Score =  439 bits (227), Expect = e-128
 Identities = 236/239 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cattcaggggactaatatttcatttaatgagaataggccaggggtcctgttatttgttct 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 cattcaggggactaatatttcatttaatgagaataggccaggggtcctgtcatttgttct 260

                                                                       
Query: 61  catagatggtcacaggagaaagaaggaaggcacaggttcctgtttcctctcaaatgtcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catagatggtcacaggagaaagaaggaaggcacaggttcctgtttcctctcaaatgtcag 320

                                                                       
Query: 121 tctctcatttctcaggcccagagaatgagtagataaatgaatgaatgagcaatccaccat 180
           |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct: 321 tctctcatttctcaggcccagagaatgagtggataaatgaatgaatgagcaatccatcat 380

                                                                      
Query: 181 aaaacattttcttttcactttacatgtctatggagttaaacccagggccttgcatgcac 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaacattttcttttcactttacatgtctatggagttaaacccagggccttgcatgcac 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)