Query= MSMg01no404_g15.b1 MSMg01no404_g15.b1 CHROMAT_FILE:
MSMg01no404_g15.b1 PHD_FILE: MSMg01no404_g15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:05 2005
(496 letters)
>mm_chr4_13660594_13661489
Length = 896
Score = 882 bits (456), Expect = 0.0
Identities = 486/500 (97%), Gaps = 8/500 (1%)
Strand = Plus / Minus
Query: 1 cactgccttgctgagcggacgccattgtgggtcaacacagtgaattctgcctctcaccga 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 870 cactgccttgctgagctgacgccattgtgggtcaacacagtgaattctgcctctcgccga 811
Query: 61 atttcatgctatgtgctaggctctattctaagcagtatttactaagttttaactagttcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 atttcatgctatgtgctaggctctattctaagcagtatttactaagttttaactagttcc 751
Query: 121 ttccaaaacagtcagtagttggagaggaactattgtatcccaggaaactgaagccaggtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 ttccaaaacagtcagtagttggagaggaactattgtatcccaggaaactgaagccaggtt 691
Query: 181 tagcttaactatcaatcttccctctgtaaaatgagcaggaagcataatttaaaccccagc 240
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 690 tagcttaactatcaatcttccctgtgtaaaatgagcaggaagcataatttaaaccccagc 631
Query: 241 ggtatggtcttttt----ctagtccaggtcagtctcagagtctctctagagtttaccctg 296
||||||| | | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 ggtatgggc----tagcactagtccaggtcagtctcagagtctctctagagtttaccctg 575
Query: 297 cctctccagaaggattcattcgaatctctggatgctgggcgagataaacaccaatgaaaa 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 cctctccagaaggattcattcgaatctctggatgctgggcgagataaacaccaatgaaaa 515
Query: 357 tcatgtttctctcttcttaaacacttcggggtaaattgaagggcagacaagcttgaagca 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 tcatgtttctctcttcttaaacacttcggggtaaattgaagggcagacaagcttgaagca 455
Query: 417 actgatgtctgattctaagagaagcctccttggaatcaaatggcaaagaagcataaccct 476
|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct: 454 actgatgtctgattctaagagaagcctccttggaatcaaatgacaaagaagcacaaccct 395
Query: 477 cacgtgaggcccaggtactc 496
||||||||||||||||||||
Sbjct: 394 cacgtgaggcccaggtactc 375
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space: 430596
Effective search space used: 430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no404_g15.g1 MSMg01no404_g15.g1 CHROMAT_FILE:
MSMg01no404_g15.g1 PHD_FILE: MSMg01no404_g15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:05 2005
(432 letters)
>mm_chr4_13506712_13507543
Length = 832
Score = 804 bits (416), Expect = 0.0
Identities = 428/432 (99%)
Strand = Plus / Plus
Query: 1 aaactactccaatgtttccctaaaactctggtttgtttggaagcaagcaggcgtttatag 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 aaactactccaatgtttccctaaaactctggtttgtttggaagcaagcaggcatttatag 260
Query: 61 actatcatccaacggaaaaaaaaaatctcaacactacataatttaaaggtctttttcttt 120
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actctcatccaacgggaaaaaaaaatctcaacactacataatttaaaggtctttttcttt 320
Query: 121 tactaaaactcaacttagcttttaaaaattattcttgtcctaattttcatgtaccacact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tactaaaactcaacttagcttttaaaaattattcttgtcctaattttcatgtaccacact 380
Query: 181 gaaccatgaatcagtttgagtacttttacaagagtctccctttcttctcatgtaactatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaccatgaatcagtttgagtacttttacaagagtctccctttcttctcatgtaactatt 440
Query: 241 ctctagcttcacaaaacaagttcatactcccttgagcaaattaagacaaagatagagaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctctagcttcacaaaacaagttcatactcccttgagcaaattaagacaaagatagagaag 500
Query: 301 ataattaaacatcaacaaaaattgttcaccattgcatttctactttcattttatgtggta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ataattaaacatcaacaaaaattgttcaccattgcatttctactttcattttatgtggta 560
Query: 361 tttagagtttagttttatttcattgtatttttaaatgagatcaagaagagtggtggataa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttagagtttagttttatttcattgtatttttaaatgagatcaagaagagtggtggataa 620
Query: 421 ccacttactgcc 432
||||| ||||||
Sbjct: 621 ccactcactgcc 632
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 432
Length of database: 832
Length adjustment: 9
Effective length of query: 423
Effective length of database: 823
Effective search space: 348129
Effective search space used: 348129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
