Query= MSMg01no404_i11.b1 MSMg01no404_i11.b1 CHROMAT_FILE:
MSMg01no404_i11.b1 PHD_FILE: MSMg01no404_i11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:14 2005
(238 letters)
>mm_chr4_134534940_134535578
Length = 639
Score = 379 bits (196), Expect = e-110
Identities = 232/250 (92%), Gaps = 13/250 (5%)
Strand = Plus / Plus
Query: 1 acccacctagaatgaattgaggcttcaagctctcttattatggtcggcttcccctacaaa 60
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct: 201 acccacctagaatgaattgaggcttcaagctctcttattagggttggcttcccctacaaa 260
Query: 61 ctctaaggagggagtttcactctgttcttgccaaggttccataggtgcaatttgctgggt 120
|||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 ctctaaggagggagtttcgctctgttcttgccaaggttccataggtgcaattttctgggt 320
Query: 121 cgccctctccagggagcagagagcagaccagggagctttgt-cccccc----------gc 169
||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct: 321 cgccctctccagggagcagagagcagaccagggagctttgttcccccccccaccccctgc 380
Query: 170 caccttgtc-tccggtgagccactctgggaacttagctttttgcagagagggtttctacc 228
||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacctag-catccggtgagccactctgggaacttagctttttgcagagagggtttctacc 439
Query: 229 aaaaccctcg 238
||||||||||
Sbjct: 440 aaaaccctcg 449
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 639
Length adjustment: 9
Effective length of query: 229
Effective length of database: 630
Effective search space: 144270
Effective search space used: 144270
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no404_i11.g1 MSMg01no404_i11.g1 CHROMAT_FILE:
MSMg01no404_i11.g1 PHD_FILE: MSMg01no404_i11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:14 2005
(424 letters)
>mm_chr4_134667731_134668554
Length = 824
Score = 696 bits (360), Expect = 0.0
Identities = 405/426 (95%), Gaps = 10/426 (2%)
Strand = Plus / Minus
Query: 9 cctctctgtccctgtactgttgtagtgagtctggagacattctgattcttctgtcttgtg 68
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 cctctctgtccctgcactgttgtagtgagtctggagacattctgattcttctgtcttgtg 579
Query: 69 aggctgggtgaggaatgaccaggatgtgtggaaatgccagatcctctcttcagaggtctg 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 aggctgggtgaggaatgaccaggatgtgtggaaatgccagatcctctcttcagaggtctg 519
Query: 129 ttaggtgagcaaaaacctcagct----------ctctactcactgtctcttgtgaatggc 178
|||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct: 518 ttaggtgagcaaaaacttcagctctcaaaatgcctctactcactgtctcttgtgaatggc 459
Query: 179 tctgcctgcctctctccccaagtcaggtcctagctcaccctttaatcttcttcctaaccc 238
|||||||||| ||||||||||||||||||||||||| |||| ||||||||| || || ||
Sbjct: 458 tctgcctgcccctctccccaagtcaggtcctagctcgccctctaatcttctccccaatcc 399
Query: 239 ccatgccctttttcctgctggtgaacccttccaaatcacaatcttgctttttggctctgt 298
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 ccatgccccagttcctgctggtgaacccttccaaatcacaatcttgctttttggctctgt 339
Query: 299 ggatggcacccagggcctggaacatgctatgcacatgctctatcatagagtcacagtcta 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 ggatggcacccagggcctggaacatgctatgcacatgctctatcatagagtcacagtcta 279
Query: 359 tcctcatgtcacttcttactcccacatcagcaattggttcttcatctctctctttctcag 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 tcctcatgtcacttcttactcccacatcagcaattggttcttcatctctctctttctcag 219
Query: 419 gtaagt 424
||||||
Sbjct: 218 gtaagt 213
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 824
Length adjustment: 9
Effective length of query: 415
Effective length of database: 815
Effective search space: 338225
Effective search space used: 338225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
