BAC Information

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BAC

Clone NameMSMg01-404I14
Chromosome4 (Build37)
Map Location 122,776,546 - 122,958,088
singlet/doubletdoublet
Overlap geneBmp8b, Oxct2b, Ppie, Hpcal4, Nt5c1a, Heyl, LOC194197, LOC622334
Upstream geneLOC633269, LOC633279, 9530002B09Rik, Ppt1, Cap1, Mfsd2, Mycl1, Trit1
Downstream genePabpc4, Bmp8a, Oxct2a, Macf1, D830031N03Rik, LOC100039110, Ndufs5, 6330407G11Rik, Rhbdl2, LOC667064, Mycbp, Rragc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-404I14.T7 (MSMg01no404_i14.b1)MSMg01-404I14.TJ (MSMg01no404_i14.g1)
ACCAG503181AG503182
length780780
length of high quality
(start - end)		244 (67 - 310)440 (66 - 505)
definitionCHROMAT_FILE: MSMg01no404_i14.b1 PHD_FILE: MSMg01no404_i14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:15 2005CHROMAT_FILE: MSMg01no404_i14.g1 PHD_FILE: MSMg01no404_i14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(122,776,546 - 122,776,789)(122,957,751 - 122,958,088)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATCAA
CATTACATGAACTGGTCCAAAGGCTGGCGACAGGCAGACAAAGTGCTTAT
GGATTTTTATTTAACTATTTTGTTATTATCAGGGGTTGAAGCATGGGCCT
TATTGGGCCGTTGTGCTCCTTTGCCTCTTTAGGATAGGTAAGCATATGGG
TTATCATATCCTGGGAATAAGATAAACTGGATTTTCTCAGCATTTTGTAG
GCACCAGTCATGGAGGCACGTGAGGTACCCTTTGGGCCCTCAGTGGTCAG
TCAAAGAGTCTCTGTTTAGTCTCCACTCCAGGGCAGTCTCTAATCCTGTG
GTAGGACTGATTACATTGATTAGATCATAAAATGCTGCCCCCATTCCCAC
CCACTGCAGCTCAAGGAGCAAGATCTAAGTGCTCTTTGGCTGACACAGCA
AATGCATAGGTAGAGACAGGCGGGGAAGACGGGTGTGCTCATCATGCAGG
AAGAAAGGAAATCAGGAAGGTAGTGTTTTGATGTGTCCTAGATTGATGAG
ATCAGACAGGCACTCTCGGGCCATGAAGACTACTCTGTAACAGGAATGCT
TGCCTGGTGGTGTTTGGGGAACCCTATAAAAGTCCCTCCGTGTATTTTTT
TTTTGTGTTTTATATAAGGGTTCCGCTGGAATACTCGAGAAAAGTTTTTT
TTGTATTCTTTTTTAAATTTGTTCTTTTTTCTCTCCTGTGACTTCTCTTT
ATCCTTCTTTCGCCTTGCTTCCCCCCCCTN

GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXAAGGCATAGATAAGCAAACGCCACATGCTTTTACG
CTCATGACGGTCTAGTTCAGAATTTCCTGCCTTCACAACTGTCATCAGGC
TATCTTCGCTGAATTTTAATCTATAAGTAGCCTAATAAAGTCTATTAACA
CAAGGGGTTGGAGAGAGAGCTCAGCGGTCAAGAACACTTGCTGCTCTTAC
AGAGAGACTGGGTTTGATTCCCAGCAACCATGTGGCAGATTATAATCCCT
TATAACTCCAGGTCTTGTGAATCTGAATGCAGTACATGTACATACAGGCA
GGCACTCACATAAATACAAGTAAAAGAATAAATCTAAAAAATTCCTTTAG
AGCCTATTAATGCTTAGCATATAAGTACATGTAAAGTTTTTGCACAGGTA
TGTAGAAGCTGTGTGTGGTGGTACACACCTATACTCCCAGAGTTTGAGAA
CCACAAGCAGGATTACTATAAATTCTAAGTCAGCCTAACATGCTCAGAGA
CCAGCTGTGGTGTGGCGGGGTATACCCTTTATCCCCAGCATTCCTTCCCC
GTGCCATATGTATGGTTATCTCCGCGAATTTAAAAGCCGCTATGGGCTAC
ATTTCACGCGTCCCAAAATTCCGCGTATTATTTAAAAAGAACCCCCCCCG
CCGCATTTCCCCCTCAAAATAAAAAAAATATTCTCAGCGCTCTCCCCCTC
AAATTTTCTTTATTAATGAAACAAACTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no404_i14.b1 MSMg01no404_i14.b1 CHROMAT_FILE:
MSMg01no404_i14.b1 PHD_FILE: MSMg01no404_i14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:15 2005
         (244 letters)



>mm_chr4_122776346_122776989
          Length = 644

 Score =  433 bits (224), Expect = e-126
 Identities = 239/244 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccaaaggctggcgacaggcagacaaagtgcttatggatttttatttaactattttgttat 60
           ||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 ccaaaggctagcgacagtcagacaaagtgcttatggatttctatttaactattttgttat 260

                                                                       
Query: 61  tatcaggggttgaagcatgggccttattgggccgttgtgctcctttgcctctttaggata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatcaggggttgaagcatgggccttattgggccgttgtgctcctttgcctctttaggata 320

                                                                       
Query: 121 ggtaagcatatgggttatcatatcctgggaataagataaactggattttctcagcatttt 180
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtaagcatatgggctatcatatcctgggaataagataaactggattttctcagcatttt 380

                                                                       
Query: 181 gtaggcaccagtcatggaggcacgtgaggtaccctttgggccctcagtggtcagtcaaag 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 381 gtaggcaccagtcatggaggcacgtgaggtaccctttgggccctcagtggtcagtcaacg 440

               
Query: 241 agtc 244
           ||||
Sbjct: 441 agtc 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no404_i14.g1 MSMg01no404_i14.g1 CHROMAT_FILE:
MSMg01no404_i14.g1 PHD_FILE: MSMg01no404_i14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:15 2005
         (440 letters)



>mm_chr4_122957751_122958590
          Length = 840

 Score =  607 bits (314), Expect = e-178
 Identities = 332/338 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaggcatagataagcaaacgccacatgcttttacgctcatgacggtctagttcagaattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 aaggcatagataagcaaacgccacatgcttttacgctcatgacggtctagttcagaattt 279

                                                                       
Query: 61  cctgccttcacaactgtcatcaggctatcttcgctgaattttaatctataagtagcctaa 120
           ||||||| |||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 278 cctgcctccacaactgtcatcctgctatcttcgctgaattttaatctataagtagcctaa 219

                                                                       
Query: 121 taaagtctattaacacaaggggttggagagagagctcagcggtcaagaacacttgctgct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 taaagtctattaacacaaggggttggagagagagctcagcggtcaagaacacttgctgct 159

                                                                       
Query: 181 cttacagagagactgggtttgattcccagcaaccatgtggcagattataatcccttataa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 cttacagagagactgggtttgattcccagcaaccatgtggcagattataatcccttataa 99

                                                                       
Query: 241 ctccaggtcttgtgaatctgaatgcagtacatgtacatacaggcaggcactcacataaat 300
           |||||||||  | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98  ctccaggtccagggaatctgaatgcagtacatgtacatacaggcaggcactcacataaat 39

                                                 
Query: 301 acaagtaaaagaataaatctaaaaaattcctttagagc 338
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 38  acaagtaaaagaataaatctaaaaaattcctttagagc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 840
Length adjustment: 9
Effective length of query: 431
Effective length of database: 831
Effective search space:   358161
Effective search space used:   358161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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