BAC Information

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BAC

Clone NameMSMg01-404K04
Chromosome4 (Build37)
Map Location 151,756,597 - 151,756,770
singlet/doubletsinglet
Overlap geneChd5
Upstream geneCamta1, LOC100041960, Dnajc11, Thap3, Phf13, Klhl21, Zbtb48, Tas1r1, Nol9, EG666980, Plekhg5, Tnfrsf25, Espn, LOC100043284, Hes2, Acot7, Gpr153, Hes3, Icmt, Rnf207, Rpl22
Downstream geneKcnab2, LOC100042028, Nphp4, LOC667039, Gm833, LOC100042089, Ajap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-404K04.T7 (MSMg01no404_k04.b1)MSMg01-404K04.TJ (MSMg01no404_k04.g1)
ACCAG503256AG503257
length792832
length of high quality
(start - end)
174 (62 - 235)190 (65 - 254)
definitionCHROMAT_FILE: MSMg01no404_k04.b1 PHD_FILE: MSMg01no404_k04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:23 2005CHROMAT_FILE: MSMg01no404_k04.g1 PHD_FILE: MSMg01no404_k04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGGCCGCTANACGACTCCTATTTTCAGAAATCCGCGGAATTCAAATCTG
ATCGCAGAATAGCTGCTCTAGAGCAAAGATGCTGAGCCGCAGATGTCTGT
GACCAGTTCTTCTCCCTCCTTGGATGACCGGGGTGACAGGAGGGGTGGGG
AGAGGGACAGGATGAGTGTGTCTCCTGAGAAAATAGCCATCCTGACCAGG
AGGAACTTGCAAGTCCAGGCTCCTGTCCTCTGGCCTCATCTATTTATTCC
CAGAAAGCACCCAGTTGGCTGCCCATGAGGCCTGTGGCAGGGCACAGGAA
GAAGCGCCCTTCTTTTTTGAAATCCCCACTGTGACTCAAGCTCAGCTCCT
TTTTGTCTGGCATCGGCTCCTTGTCCGGTAGCACTTCCTCTGCTTTTAAA
GCATAGGGATGGTGCCTCATGTTTATTTTTGGGCCCCCTATCTTTCCTAA
CTGTTTATTCTGTTTTTTTTGCCACTGTTCTTATGTTTATCCCCTGTTTA
TTTTTGTTTTTTTTTTCTTTCCTGCTCTTTTTCATTTTTTTTTCATTCTT
CGGTGTTCTCTAATTTTTTTTTTTTTTTTTTGTTTTCCCACTTCCTTCGT
TTTTTTCTCCATGTTTTTTTCCCTTTTTCTCCCTTTTTTTTCCTTTTCTT
TGTTTTCTTATCTTCTTTTGTCTTTCTTTTTTCTTTTCTTTCTTACCTAC
TCTTATTCTTCTTTATCTTATTTTCCGCCTCTCCCTCTACTCCTATTTTG
TTTTTATCTGATTTTAACCCATCTTTCCTATCCCACTCCTTN
GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTTCAGAAATTCCATGCCCTCTTTTGGCCTTCACAGACATACCCAC
ATGTGTGGCATACACCACACACACACGCGCACACACGCACACGCACGCAC
GCACTCGCGTGCGTGTGTGTGCGTGTGTGTGTGTGTGCGTGTGTGTGCGC
GCGCGCGCGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTCTTTTTT
TTCTTTTTCCTTTTTTTTCCCTTCCTTTTTCCCTCTTCTTTTTCTCCCCT
TTTTTCCCCCTTTTTCATGCTTTTTCCCCCCCCCCTTTTTTTATCTCCTC
CTTTTTTTTTTTTTTCTTCCCCTTTTTTCTTTCTTCTTTTCTCTTTTTTC
TTTTCCTTTTTTTTTTCTTTTTATATTCTTTCTTACTATTATTCTTTTTT
TTCTTTCTATATTCTCATTCATTTTTCTTTTCCTCTTTTCTTTTTTTTTT
CTCCCCCCTTTCCTCCCAATACTCCTACTTTTTTTTTTTTTTTTTTTTCA
TCACTTTCTTTTTTTTTATATCTCTCCCCTTCTTTTTTTTTATTTTTCTT
TTTTATTTATTATTCCCCTCTCTTTTTTCTCTTCTCCCCTCCTTTTTTAT
TTTTTTTCTCCTCCCCTTTTTTTTTTATTTCCTTTTTTTTTCTTATTCCA
CTCCTTTCTCTTCTCCTCCTCTTCTTTTTTTTTTTTTTTTTTACCTCCTC
TTATTTTTTCTCCTTTTAATATATTTTTTTTCTTTTTTTATTTTTTCCCA
CTTTTTTTCTTATTTTTCTAATTTAAATTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no404_k04.b1 MSMg01no404_k04.b1 CHROMAT_FILE:
MSMg01no404_k04.b1 PHD_FILE: MSMg01no404_k04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:23 2005
         (174 letters)



>mm_chr4_151756397_151756970
          Length = 574

 Score =  337 bits (174), Expect = 3e-97
 Identities = 174/174 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   gctgctctagagcaaagatgctgagccgcagatgtctgtgaccagttcttctccctcctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 gctgctctagagcaaagatgctgagccgcagatgtctgtgaccagttcttctccctcctt 315

                                                                       
Query: 61  ggatgaccggggtgacaggaggggtggggagagggacaggatgagtgtgtctcctgagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 ggatgaccggggtgacaggaggggtggggagagggacaggatgagtgtgtctcctgagaa 255

                                                                 
Query: 121 aatagccatcctgaccaggaggaacttgcaagtccaggctcctgtcctctggcc 174
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 aatagccatcctgaccaggaggaacttgcaagtccaggctcctgtcctctggcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 174
Length of database: 574
Length adjustment: 8
Effective length of query: 166
Effective length of database: 566
Effective search space:    93956
Effective search space used:    93956
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)