BAC Information

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BAC

Clone NameMSMg01-404O01
Chromosome4 (Build37)
Map Location 14,864,010 - 14,864,257
singlet/doubletsinglet
Overlap geneOTTMUSG00000004551
Upstream geneLOC625831, LOC433687, LOC100040030, LOC433688, Slc26a7, 1700034K16Rik, Otud6b, LOC100040047, Tmem55a
Downstream geneEfcbp1, Tmem64, LOC100040095, LOC633695, Calb1, Decr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-404O01.T7 (MSMg01no404_o01.b1)MSMg01-404O01.TJ (MSMg01no404_o01.g1)
ACCAG503440AG503441
length772739
length of high quality
(start - end)
249 (62 - 310)420 (62 - 481)
definitionCHROMAT_FILE: MSMg01no404_o01.b1 PHD_FILE: MSMg01no404_o01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:41 2005CHROMAT_FILE: MSMg01no404_o01.g1 PHD_FILE: MSMg01no404_o01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXNCTTCATCAGGATGCGCGGAATTCTCTC
AATTGACAAAATAAACCTTGACTGTGTAAGTTCTTGCCTTAACTTTTCAG
AGAGTTGGATTACAGGCCTGAGCTATGAGGCCAGGCTTGCTTTTATATTG
CTATTATTTAGACCACTGGAACTGGATACTTGCTCAAGCACACCTCTAAC
TCCTGCTGGCATTCCAGGTACAACACAGTAACTCCAGGCATTGTTTGCTA
CTAAGAGTGTTGTTGTGTGAGTTTTACAAGACTAATTCTGCTATTCACTA
ACAATAATCTCTTTTTATAATTAATTTATGTGGAAGGGTGTCTCTCTGAC
TATTATACCAGTTAACTTATATAATGAGACATTTTAAAAAACAATAACAA
CATGAAAACACACAGCTAGCTATTTTCAGTAAGGACTTATTCTCCTACCT
GGCTGGTCGTTTAGACATAGGACTGGTTGATACTTATTAACCTCTTTTAC
TTTACATAATTTTTAAACTCTTCTTACTGACCCACTCTTTATTTTCTTTT
TACCTTTTTAAAATCTACCTCTTATAATCTACATTTTCACTGTCCTATTT
ACTTTTTTATTTACTCACAATTTATTTCTTCCTCTTTTCCTCCTTGCTAT
TATTCCCAATTTATGCCTTTATCTGACTCTTGCCTATACTGTTATTATTC
CTATTTTCCTCCACCCATATCCCCATCTTAATTTTTTTTCCCCCATCCCC
CTCTTATTTTCTCTCTTCTTTN
TGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XTTCGAAAAATTCTTCTTAGAGGGGGGAACAAAATGCCCATGAGAGGATT
TCCCGAGACAAATTTCAGAGCTAAGACTGAAGGAATGACCATTCAGAGAC
TGCCCCACTTGTGGATCCATCCCATAAACAGCCACCAAACCCACACACTA
TGACAGATGCCAACAAGAGCCTGCTCTCGGGAGCTTGATAAAGCTGTCTT
CTGAGGGGCTCTGCCAGTGCCTGGAAAATACACAAGTGGATGCTCACAAT
CATCCATTGTTTTTTTTCTCAAGGTCACCAATGAAGGAGCCAGAGAAAGT
AACCAAGGAGCTGAAGGAGTCTGAAGGAGGAACATCAATATGGACTAACC
AGTATACCCAGAGCTCCTTGGAACTAAACCACCAGTCAAAGAAAACCTGT
GATGGAACTTGTGGCTCTAGCGGCTTATGTAGCAGAGGATAGCCTAGTCT
GTCCTCAATGGGAGGAGAGGCCCTAGGTCCTGTGATGGTTCTATGCCCCA
GTATAGGTTAATGCCAGGACTATTAATGGTAGCCGCCCCCTTTGTCTTTA
ATTTATATTCCCCCTCCTTTCTTTATTCCCCCCACTCTCTTTCTCCCTCT
CTATTTTTCATCTTATGTTCCCTTTTCCCCCTTTTCTTTTTCCCCCTCCT
CTCTTTTTTTTTTTCTCCCCCCTTTCTTCTTAATTATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no404_o01.b1 MSMg01no404_o01.b1 CHROMAT_FILE:
MSMg01no404_o01.b1 PHD_FILE: MSMg01no404_o01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:41 2005
         (249 letters)



>mm_chr4_14863810_14864458
          Length = 649

 Score =  472 bits (244), Expect = e-138
 Identities = 247/248 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   taaaccttgactgtgtaagttcttgccttaacttttcagagagttggattacaggcctga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 taaaccttgactgtgtaagttcttgccttaacttttcagagagttggattacaggcctga 389

                                                                       
Query: 61  gctatgaggccaggcttgcttttatattgctattatttagaccactggaactggatactt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 gctatgaggccaggcttgcttttatattgctattatttagaccactggaactggatactt 329

                                                                       
Query: 121 gctcaagcacacctctaactcctgctggcattccaggtacaacacagtaactccaggcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 gctcaagcacacctctaactcctgctggcattccaggtacaacacagtaactccaggcat 269

                                                                       
Query: 181 tgtttgctactaagagtgttgttgtgtgagttttacaagactaattctgctattcactaa 240
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 268 tgtttgctactaagagtgttgttgtgtgtgttttacaagactaattctgctattcactaa 209

                   
Query: 241 caataatc 248
           ||||||||
Sbjct: 208 caataatc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)