BAC Information

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BAC

Clone NameMSMg01-404O11
Chromosome4 (Build37)
Map Location 56,234,658 - 56,234,904
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC670211, Rad23b, LOC666953, LOC100041348, Klf4
Downstream geneActl7b, Actl7a, Ikbkap, BC026590, Ctnnal1, D730040F13Rik, 6430704M03Rik, Epb4.1l4b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-404O11.T7 (MSMg01no404_o11.b1)MSMg01-404O11.TJ (MSMg01no404_o11.g1)
ACCAG503460AG503461
length774757
length of high quality
(start - end)
103 (63 - 165)245 (63 - 307)
definitionCHROMAT_FILE: MSMg01no404_o11.b1 PHD_FILE: MSMg01no404_o11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:43 2005CHROMAT_FILE: MSMg01no404_o11.g1 PHD_FILE: MSMg01no404_o11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGGCGCTAAAAGAACAACATTTCTCACTCGAGGCGCGGAANNCNGCACTT
TTCAAACTAGTCCTGGGCTTTTTTTGGCTGGGAGACTATTAATAACTGCT
TCTATTTCTTTAGGTGATATGGGACTGTTTAGATGATCAACTTGATCCTG
ATTCAACTTTGGTACCTGGTATCTGTCCAGAAATTTCTTCATTTCGTCCA
GGTTTTCCAGTTTTGTTGAGTATAGACTTTTGCAGAACTTTTTGATGGTG
TTTTGGATTTCTTCAGGATCTGTTGTTATGTCTCCCTTTTCAGTTCTGAT
TTTTTTTTTTTTTATTCTGTCCCTGTGCCCTTTAGTGAGTCTAGCTAATT
TTTTATCTATCTTTGCGATTTTCTCAAAGAACCTATTCCTCCTTTGGTTA
AATCTTTGAATAGTTCTTTTTGTATCCATTTGATTGATTTCACCCCTGAT
TTTTATTATTTCCTGCCGTCTACTCCTCTTGCGCGACTTTGTTTCCTTTT
CTTCCTGTTTCTTTTTAATGTGTTGACTCACCCGCTTCCATGTTATGTTC
TCCCGTATTATTTTTCTTATCTTTTAAATTTTCCTTTTTTTCCCACTCTT
ATAATTGTTTTTTTTTTTCCCTTCTTTATTTTTTCTTTCTGTTTTTCACT
TCCTCTTTTTTTTTTATTTCTCCAACGCTCCGAAAACTACTTTTCTTTTT
ATTATTATTTATCACAACATCTATTTCTTCATTTTATCTTTTTGACCCCA
CCCCCTTCTTTTTCGCTCTTATTT
GAGGCCTGGCGGCCGCCTGTTTCAAAAAAGAGGNGACACTATAGAAGTTT
CAGAAGAAAATCTCTAGGACTTAGAATTAAGAGCCTAAGATGCCTCCTGA
AGAGGATGCCCTCCTAAAGACACAGTGCTCCTTGGGAAGTCTCCAGCAGG
TGAAAGGCTTGGATGGGCCTTTTTTTTCCCTCCATGAACTTGGTTTTTCT
TTCCCACATTCTCAGGTGTGCTGGGAGGCCCTGGGAAGTCTGCAGACTTT
TTCAAAAGACACTTCCACCTCCTAATCTCTTTGCCTACAAACCAAATATT
GATCTATTTTGATTACAGCCAGTGGAGGAGAGCTTGTATAGCCCTGTTTA
TTCAGCAGTTGGGCCCCCCTGACAGCTGTTCACTGGGGGATTATGAAGTC
ACGGCAGTAATTACACTATAAACAGGGGATGGGGGAGAAGAAAGCCAGAA
AGTGAACTGTGAGCTCTGTTACCAGGCAACATAAAATATGTAACCGGAAA
CCCAGCAAGCACGTACATTTCCCTAAAAGCCTCCCAGATGTCCTCACTTT
GGGGCCAATGTTCTATTTCAGTCTCGATTTGTATATTTATCCCCCCTCCC
ATTGAATATTGGATTTTATCCCGTCGCCCTGAATAAATACCCGATTCTTT
TTTTTTTTTCTTCCACTATTTTTTTCGCTTTTTATATATAAGTCTCATAT
TTCCTCCCCAGGTTCTTTTTTCCTCGTATATCTCGGATTTTTCCATTTCC
TGTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no404_o11.g1 MSMg01no404_o11.g1 CHROMAT_FILE:
MSMg01no404_o11.g1 PHD_FILE: MSMg01no404_o11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:44 2005
         (245 letters)



>mm_chr4_56234458_56235104
          Length = 647

 Score =  451 bits (233), Expect = e-131
 Identities = 243/247 (98%), Gaps = 2/247 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctaggacttagaattaagagcctaagatgcctcctgaagaggatgccctcctaaagaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctaggacttagaattaagagcctaagatgcctcctgaagaggatgccctcctaaagaca 260

                                                                       
Query: 61  cagtgctccttgggaagtctccagcaggtgaaaggcttggatgggcctttttttt--ccc 118
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||
Sbjct: 261 cagtgctccttgggaagtctccagcaggtgaaaggcttggatgggccttttttttttccc 320

                                                                       
Query: 119 tccatgaacttggtttttctttcccacattctcaggtgtgctgggaggccctgggaagtc 178
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 tccatgaacttggtttttctttcccacattctcaggtgtgctgggaggccctgggaagcc 380

                                                                       
Query: 179 tgcagactttttcaaaagacacttccacctcctaatctctttgcctacaaaccaaatatt 238
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agcagactttttcaaaagacacttccacctcctaatctctttgcctacaaaccaaatatt 440

                  
Query: 239 gatctat 245
           |||||||
Sbjct: 441 gatctat 447


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 647
Length adjustment: 9
Effective length of query: 236
Effective length of database: 638
Effective search space:   150568
Effective search space used:   150568
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)