TTTATTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCTCAGTATTCAAGGTGCAGGAAGTATGGCGCTGAATAATT
TTACTTTCTGTCTTACATCTGTTAATGACACGCACCCCATCATTTGCCTC
CTGTTTTACATCTGTTAATGACATGCACCCCATCATTTCCCTCCATCCAA
GCTTTGTTCTTTGTTCAAATCGCCCAGCTCTGGTTCTTCCTGTGGGGTAT
GCTCTGTAATGTCATCACTTCATATTAAACGCACTATCTTGACACAGCCT
GTTTACAGATTTAATACCTGTGTTTTAACTGCAGCCTACCTATTGGAGTT
ATTTTATCAGAGGTGAGGCTATAGTAGGGATAAAGTGGGGGGCTAAGAGG
GCTGAGTGTACTATGCATTATATGACCATCCATCTGACCTAAGTGAAGGA
ACGTGAACAGGAAGACAGCAGAGAGCACCGAGGGATTCCTGGCCCGGGCT
GCTTGCAGTATCCCATCTCATCTTTGTCCTTATTAGGTTTGGAGTCCAGG
ATCCCCAGCTTCTCTAGCTGGNCCTGCAGAGAGGGTTATCGTCCAAGGTC
ATGGACACGTGCTTGAACATGTAGGGATGTATAGTGGCAAACACTTGGAA
CTCCCAAAAATTGTTCTCTCCCCACTAAACTCCTTAATGAATTGCCCGGC
ACCTAATAACTCTTGGATGCTCCACTCTTTTTGATTAAACATAGCTTTTA
GCCCT

NNTTTCGATTGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGGTAGTAGTTCTTTTAAAA
ATGCTTAAACCTCCCGTCCCATTGCTCCTCTTTTTGCTCTTGGTTGGAGT
TTTGTGGTAAGAACTTACTGGTGAAGATACCCCATATTTGGTCCAGGACA
TGAAATCAAGTTGGTACTGACCAGGAAACATCCTTCCTGCTGGCTAGCTT
TCATAGTACTAAGGTGTTATGTAGGCTGTCAGAGGAGAAAAGTCATCAAC
AGACTTACCAAGCTGTGACCCTATGAACTAGAAGAATAACCAGTGTGGCA
AGATATGCCAATGGATGCAAAAGTGACATGCATGCAATAAGGCTGGAGCT
AACCAACTGTTTTCTGATTGGATTTAAAACACATGACAAAGGAAGGAATA
TTTCCTAGCATTGTGAATCAGGCTAAGAATTCATGGTTGGAGAGCTCATA
GGCCCAAGGGCTGCGCCTACTTTTAGTATTTTGGCAAATGGATATATCAA
ACTTTTCTCTAGATTCTTATTCTCCTAAGTCATATCTCTATACTCATTAA
TTGGTGCAATTCTCAGGTCCTATTAGAGGCGTTTTCTTTGTGCAGCGTAT
TGGCTGTTACTGTGGCAAATTCCACTGTGGTCCCATCGTCTTTATAACCC
AACTGTTCTGTGCTTCGCTTCTTTTCGTCTAATGGCACCTTTTATACCTT
CTTTTCCTTATCCCC

Query= MSMg01no405_a08.b1 MSMg01no405_a08.b1 CHROMAT_FILE:
MSMg01no405_a08.b1 PHD_FILE: MSMg01no405_a08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:53 2005
         (501 letters)



>mm_chr4_48146915_48147815
          Length = 901

 Score =  905 bits (468), Expect = 0.0
 Identities = 489/496 (98%)
 Strand = Plus / Plus

                                                                       
Query: 6   aattcctcagtattcaaggtgcaggaagtatggcgctgaataattttactttctgtctta 65
           ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 aattcctcagtaaagaaggtgcaggaagtatggcgctgaataattttactttctgtctta 265

                                                                       
Query: 66  catctgttaatgacacgcaccccatcatttgcctcctgttttacatctgttaatgacatg 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 catctgttaatgacacgcaccccatcatttgcctcctgttttacatctgttaatgacatg 325

                                                                       
Query: 126 caccccatcatttccctccatccaagctttgttctttgttcaaatcgcccagctctggtt 185
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct: 326 caccccatcatttccctccatccaagctttgttctttgttcaaatctcccagctctgatt 385

                                                                       
Query: 186 cttcctgtggggtatgctctgtaatgtcatcacttcatattaaacgcactatcttgacac 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 cttcctgtggggtatgctctgtaatgtcatcacttcatattaaacgcactatcttgacac 445

                                                                       
Query: 246 agcctgtttacagatttaatacctgtgttttaactgcagcctacctattggagttatttt 305
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 446 agcctgtttacagatttaatacctgtgttttaactgcagtctacctattggagttatttt 505

                                                                       
Query: 306 atcagaggtgaggctatagtagggataaagtggggggctaagagggctgagtgtactatg 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 atcagaggtgaggctatagtagggataaagtggggggctaagagggctgagtgtactatg 565

                                                                       
Query: 366 cattatatgaccatccatctgacctaagtgaaggaacgtgaacaggaagacagcagagag 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 cattatatgaccatccatctgacctaagtgaaggaacgtgaacaggaagacagcagagag 625

                                                                       
Query: 426 caccgagggattcctggcccgggctgcttgcagtatcccatctcatctttgtccttatta 485
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 caccaagggattcctggcccgggctgcttgcagtatcccatctcatctttgtccttatta 685

                           
Query: 486 ggtttggagtccagga 501
           ||||||||||||||||
Sbjct: 686 ggtttggagtccagga 701


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space:   437481
Effective search space used:   437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)