BAC Information

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BAC

Clone NameMSMg01-405A20
Chromosome4 (Build37)
Map Location 136,966,266 - 137,122,111
singlet/doubletdoublet
Overlap geneEla3, 1700013G24Rik, Hspg2
Upstream geneHtr1d, LOC100042540, Luzp1, Aof2, LOC667080, LOC433770, 4930549C01Rik, BC029684, Ephb2, C1qb, C1qc, C1qa, Epha8, Zbtb40, Wnt4, Cdc42, LOC665533, LOC242711
Downstream geneLdlrad2, Usp48, Rap1gap, Akp2, Ece1, LOC100040558, Eif4g3, Hp1bp3, Kif17, Ddost, Pink1, Cda, LOC625638, LOC625646, 0610009K11Rik, Camk2n1, LOC100040618
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-405A20.T7 (MSMg01no405_a20.b1)MSMg01-405A20.TJ (MSMg01no405_a20.g1)
ACCAG503574AG503575
length823824
length of high quality
(start - end)		386 (46 - 431)162 (75 - 236)
definitionCHROMAT_FILE: MSMg01no405_a20.b1 PHD_FILE: MSMg01no405_a20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:56 2005CHROMAT_FILE: MSMg01no405_a20.g1 PHD_FILE: MSMg01no405_a20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:56 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(137,121,729 - 137,122,111)(136,966,266 - 136,966,427)
sequence
TCTATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGAGAATTACAGTCCTGTGTTGTTCAAACTGATACACCAGAGAT
GCTTGCTGACTGAAGGAAACTCATGCCAGTGGTTCCAAGGTTGCCCAAGG
CCACCTTGCCAATAAGCTGTGTATGGCTCTGTCCCTCTTTGTTCCTGCCT
ATCTGTCCCTGTATGAGTTCTTCTCTTGGGTTTGTTTTCCTTGAGGATCC
AAACTGAGGTATAACTAACTGGGAGAAATGAGAATGAGAGTCCCAAGGAG
ACCAAGGAGAAGCCAAGGCCACCATCTGCCTAGCTGGCCACAGAGGGTAC
GCACCATTGCCTCCACTGCCTTCAGGGTGCCAGTCTGACTCCACTACCCC
ATATCCAGCGCCTGTGGGGAAGGAAGGATGGGATCTAGTTGGTGCACACC
GATATCTACCGTCTTTGTCTTTACCCCATATCAAACCTTATATTTCCACC
CTGAATCTTGTTGTCCTCTTTCACTCTTTATTCTCTTCCCCTTTATCTTT
TCTCTCTTATCTTTATTTTTCTTCTCCCACCTCCTTTTTTATCTTTTTTA
TTCTCTATTTTCCCCCTTTTTTTTTTTTTTTCTTTTTCATTTTCTATCTT
TACTCTTATCACTATCATTCTTTTAATTACCAATCTTTCTCCCTTTTCTC
TTCCCTCTTACTTTTTTCCCCCCCTTTTTCATTTCTCTTATTTTATCTTT
ACTCCCTTTCTCTTTTCACCTCTTCTTCTTGTATCTTCTCCTCTACTCAT
CCTCCTCACTTTTCTCTTCCCTG

CATGATATTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAACCTATAGACCAGGCTGGCCCTGAC
TCAGAAATCCACCTGCCTCTGCCTCCCAAGTGCCAAAAATTTTAAGACGC
TGTCCCTAGCCAGTGAGGGTGGGTGCCATTCAGAAACAAAATGTGGGTGA
TCGGGAGGGGACCCCTCCCTTTCCATTTGCCTTGGGATGTATAGGCAGTA
CGACATATTGTCTCTGTGTACAATATGTTTGTGATTACTGAATCCAGTTC
GGGCGGAGTGGAGACTCCCATCTTTTTCTAGGTTTGCTCATTATTATCGT
CTTGTGCTCTGTACTTTTGTTTTACCGCATCTCGATTATTTTTCCGCCTT
TTTATTTTTTTTTACTTTTTTTCCCTTCTTCTACCTGTTTTTTTTCTCTA
CCCTCTTTTTTACTTTCTATCTCCCCCATTTTTTCCAACCCTTTTTTTTT
ACCTCCTTTTCTTTTATTCTTCTTCTCTTACTTTTTACTCCCTCTCCATT
ATTTTCTTTATTTTTTTTTCCTCTCACTATCACCCATTTCTTACTTTTTA
CGTTTTCCCCCTTTTCTATTTCCCCTCTTTTTTTTCTCCCCCTTCCCTTT
TTCCTCTCCCTTTCCCTTTTTCTTCTTTTCCGCCCTTTTTTACCCCCACT
TATCCTTTTATCTTTTCCTTCTTTCCCCTTTTTCTTCTTCTCCCTTTTAT
TTCCCTTCTTTCTTCTTTTTTCTCCTTTATTCCTTCTTTTTTTCATCTTC
TCCCCTCTCTTTCTCCTTTGCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no405_a20.b1 MSMg01no405_a20.b1 CHROMAT_FILE:
MSMg01no405_a20.b1 PHD_FILE: MSMg01no405_a20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:56 2005
         (386 letters)



>mm_chr4_137121526_137122311
          Length = 786

 Score =  725 bits (375), Expect = 0.0
 Identities = 381/383 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccagagaattacagtcctgtgttgttcaaactgatacaccagagatgcttgctg 63
           ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 ggaattccagagaatgagagtcctgtgttgttcaaactgatacaccagagatgcttgctg 527

                                                                       
Query: 64  actgaaggaaactcatgccagtggttccaaggttgcccaaggccaccttgccaataagct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 actgaaggaaactcatgccagtggttccaaggttgcccaaggccaccttgccaataagct 467

                                                                       
Query: 124 gtgtatggctctgtccctctttgttcctgcctatctgtccctgtatgagttcttctcttg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 gtgtatggctctgtccctctttgttcctgcctatctgtccctgtatgagttcttctcttg 407

                                                                       
Query: 184 ggtttgttttccttgaggatccaaactgaggtataactaactgggagaaatgagaatgag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 ggtttgttttccttgaggatccaaactgaggtataactaactgggagaaatgagaatgag 347

                                                                       
Query: 244 agtcccaaggagaccaaggagaagccaaggccaccatctgcctagctggccacagagggt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 agtcccaaggagaccaaggagaagccaaggccaccatctgcctagctggccacagagggt 287

                                                                       
Query: 304 acgcaccattgcctccactgccttcagggtgccagtctgactccactaccccatatccag 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 acgcaccattgcctccactgccttcagggtgccagtctgactccactaccccatatccag 227

                                  
Query: 364 cgcctgtggggaaggaaggatgg 386
           |||||||||||||||||||||||
Sbjct: 226 cgcctgtggggaaggaaggatgg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 386
Length of database: 786
Length adjustment: 9
Effective length of query: 377
Effective length of database: 777
Effective search space:   292929
Effective search space used:   292929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no405_a20.g1 MSMg01no405_a20.g1 CHROMAT_FILE:
MSMg01no405_a20.g1 PHD_FILE: MSMg01no405_a20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:56 2005
         (162 letters)



>mm_chr4_136966066_136966627
          Length = 562

 Score =  313 bits (162), Expect = 3e-90
 Identities = 162/162 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacctatagaccaggctggccctgactcagaaatccacctgcctctgcctcccaagtgcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacctatagaccaggctggccctgactcagaaatccacctgcctctgcctcccaagtgcc 260

                                                                       
Query: 61  aaaaattttaagacgctgtccctagccagtgagggtgggtgccattcagaaacaaaatgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaaattttaagacgctgtccctagccagtgagggtgggtgccattcagaaacaaaatgt 320

                                                     
Query: 121 gggtgatcgggaggggacccctccctttccatttgccttggg 162
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggtgatcgggaggggacccctccctttccatttgccttggg 362


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 162
Length of database: 562
Length adjustment: 8
Effective length of query: 154
Effective length of database: 554
Effective search space:    85316
Effective search space used:    85316
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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