Query= MSMg01no405_f06.b1 MSMg01no405_f06.b1 CHROMAT_FILE:
MSMg01no405_f06.b1 PHD_FILE: MSMg01no405_f06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:17 2005
(471 letters)
>mm_chr4_83234236_83235105
Length = 870
Score = 872 bits (451), Expect = 0.0
Identities = 463/467 (99%), Gaps = 1/467 (0%)
Strand = Plus / Plus
Query: 5 agataactgtaagtggtattttaatataattacagcaaaatatctaatgttgaagaagtt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 agataactgtaagtggtattttaatataattacagcaaaatatctaatgttgaagaagtt 264
Query: 65 ttctaatattttaatttaacaaaaacatttttaatattgataatacccagttaaagcatc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttctaatattttaatttaacaaaaacatttttaatattgataatacccagttaaagcatc 324
Query: 125 taatataatggatatttagcctagtgaatggtttaaattttggtgaatattttaagttaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 taatataatggatatttagcctagtgaatggtttaaattttggtgaatattttaagttaa 384
Query: 185 attaattaattttttgtgaccattttctaatagttatgttgtatgaaggaggtttcttat 244
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 385 attaattaattttttgtgaccattttctaatagttatgttgtatg-aggaggtttcttat 443
Query: 245 gtgccaggacaaaaaagtatttatgttcacattcatatacatagcagaatatatttgtaa 304
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gtgccgggacaaaaaagtatttatgttcacattcatatacatagcagaatatatttgtaa 503
Query: 305 aatgctataccattgtttgactttgtcattgtagtatggatcgatggtttcttagattaa 364
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 504 aatgctataccattgtttgactttgtcattgtagtatggatcaatggtttcttagattaa 563
Query: 365 aaaaacaaactccctgttcagttttacaaatgtggtgctagatactgttgaaccaaggga 424
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aaagacaaactccctgttcagttttacaaatgtggtgctagatactgttgaaccaaggga 623
Query: 425 aaaatgaactggaaaaaggaatatctgtggcttttgtaaacctcgtt 471
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aaaatgaactggaaaaaggaatatctgtggcttttgtaaacctcgtt 670
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 870
Length adjustment: 10
Effective length of query: 461
Effective length of database: 860
Effective search space: 396460
Effective search space used: 396460
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no405_f06.g1 MSMg01no405_f06.g1 CHROMAT_FILE:
MSMg01no405_f06.g1 PHD_FILE: MSMg01no405_f06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:17 2005
(537 letters)
>mm_chr4_83416053_83416989
Length = 937
Score = 969 bits (501), Expect = 0.0
Identities = 527/537 (98%), Gaps = 4/537 (0%)
Strand = Plus / Minus
Query: 1 aagaacaaattccatttataatggcatcacaaaaaataaaatacttagaaataaatttaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 aagaacaaattccatttataatggcatcacaaaaaataaaatacttagaaataaatttaa 539
Query: 61 tatgacatgaagctgtatgtagaaatttaaattagtgttggaagaaatgaaaatttttga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 tatgacatgaagctgtatgtagaaatttaaattagtgttggaagaaatgaaaatttttga 479
Query: 121 aaacacaatttttacttttgaatagttttcatattcttttgaaaagaagttggcctaagc 180
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 aaacacaatttttactcttgaatagttttcatattcttttgaaaagaagttggcctaagc 419
Query: 181 tatatgggttgagttttggaccagcagttgtagccaacaattgtgatatgctcagtagca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tatatgggttgagttttggaccagcagttgtagccaacaattgtgatatgctcagtagca 359
Query: 241 ttatgttgacctattgctatttgccttaggtttttattatatatatatatatatttcata 300
||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 358 ttatgctgacctattgctatttgccttaggtttttatta-a---atatatatatttcata 303
Query: 301 ttttgatggaaaaaatttttagaactttttccttttcttcttttatatattacatcccga 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 302 ttttgatggaaaaaatttttagaactttttccttttcttcttttatatattacatcccaa 243
Query: 361 atgcagtttcctctcccctcagcctctcttttccccccactccctccagatctagccctg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 atgcagtttcctctcccctcagcctctcttttccccccactccctccagatctagccctg 183
Query: 421 ccttcaccacacctcagaaaagagcaggccctccagggatatcaaccaaattgtgttttc 480
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 182 ccttcaccacacctcagaaaagagcaggccttccagggatatcaaccaaattgtgttttc 123
Query: 481 aaaaactgatacaaggatatcaggagattactggcttctagcactccattctactgg 537
||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 122 aaaaactgatacagggataccaggagattactggcttctagcactccattctactgg 66
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space: 488529
Effective search space used: 488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
