Query= MSMg01no405_f10.b1 MSMg01no405_f10.b1 CHROMAT_FILE:
MSMg01no405_f10.b1 PHD_FILE: MSMg01no405_f10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:17 2005
(464 letters)
>mm_chr4_52954078_52954940
Length = 863
Score = 843 bits (436), Expect = 0.0
Identities = 453/460 (98%), Gaps = 6/460 (1%)
Strand = Plus / Plus
Query: 8 ttcatctgatttc--aa-tacatcacagagagtagtgagtgtcaaagcttcacccagttg 64
||||||||| || || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 ttcatctga--tcagaagtacatcacagagagtagtgagtgtcaaagcttcacccagttg 264
Query: 65 cacttccagggtcatctacatgtctgtgtggtccaggactcacacacttccaccacccag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cacttccagggtcatctacatgtctgtgtggtccaggactcacacacttccaccacccag 324
Query: 125 tcaccactgctatacacagtgttccctcttacttgagctgtttcacccaaataatgagtg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcaccactgctatacacagtgttccctcttacttgagctgtttcacccaaataatgagtg 384
Query: 185 caatttgataacttgggtgctgcagacaaaaccaaggaaaacatacttaaccaaagattt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 caatttgataacttgggtgctgcagacaaaaccaaggaaaacatacttaaccaaagattt 444
Query: 245 gcagaatcagagaaaaaccatagctctaaggaggaaacaaatcaaaactgagattccctg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gcagaatcagagaaaaaccatagctctaaggaggaaacaaatcaaaactgagattccctg 504
Query: 305 actgtcagtgaagaccactgaccatctttgatcataaaaaaattgattctcagccactat 364
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 505 actgtcagtgaagaccactgaccatctttgatcat-aaaaaattgattctcagccactat 563
Query: 365 gtcgattcaaaacaacgcatagctaaacttgcttctaaagactatagtgttaaagtcttt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gtcgattcaaaacaacgcatagctaaacttgcttctaaagactatagtgttaaagtcttt 623
Query: 425 tttagaaatactattggaggaagaaccttgtgaggcagga 464
|||||||||||||||||||||| |||||||||||||||||
Sbjct: 624 tttagaaatactattggaggaaaaaccttgtgaggcagga 663
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 863
Length adjustment: 10
Effective length of query: 454
Effective length of database: 853
Effective search space: 387262
Effective search space used: 387262
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no405_f10.g1 MSMg01no405_f10.g1 CHROMAT_FILE:
MSMg01no405_f10.g1 PHD_FILE: MSMg01no405_f10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:18 2005
(509 letters)
>mm_chr4_53073990_53074899
Length = 910
Score = 876 bits (453), Expect = 0.0
Identities = 495/509 (97%), Gaps = 1/509 (0%)
Strand = Plus / Minus
Query: 1 attgggcagtttataatgctcttccttaaatattcaggtgatgtggagaatcccacctag 60
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct: 709 attgggcagtttatgatgctcttccttaagtattcaggtgatgtggagaatcccatctag 650
Query: 61 atattc-agtgaatactttcctggagataagtttggcttggtatgagcgagggaccagtg 119
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct: 649 atattcaagtgaatactttcctggagataattttggcttggtatgagcgagggacaagtg 590
Query: 120 ccaatggtcttggtggtgactggctgagggtcttgcgtaggccctggggtcctattgttt 179
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 589 ccaatggtcttggtggtgactggctgaggttcttgcgtaggccctggggtcctattgttt 530
Query: 180 ttgtctgttttctgccctgattcttacctgtatgatacgtgaacttggtttctttgtgat 239
|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct: 529 ttgtctgttttctgccctgattcttacctgtatgatacgtgagcttggtttctatgtgat 470
Query: 240 gacagagaaaacagaaaaccgcagacatccttcagaatctgacaggaagaaatatttcag 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 gacagagaaaacagaaaaccgcagacatccttcagaatctgacaggaagaaatatttcag 410
Query: 300 attacctggtgaagacgtacgtgcagatcatagcaaagaggtatcgtcctgtcgaaacct 359
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 409 attacctggtgaagacgtacgtgcagatcatagcaaagaggtatcgtcctgttgaaacct 350
Query: 360 ggcttgctgcagatgtagacttgagcggtagggaaatggacaatcatggctctgtgggaa 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 ggcttgctgcagatgtagacttgagcggtagggaaatggacaatcatggctctgtgggaa 290
Query: 420 atttagcacatgatatcagtgagacaagatgatacgggggcttgtgagccttgaaagttc 479
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 289 atttagcacttgatatcagttagacaagatgatacgggggcttgtgagccttgaaagttc 230
Query: 480 agcttacagaacgagtctgcctgctttag 508
|||||| |||||||| |||||||||||||
Sbjct: 229 agcttagagaacgaggctgcctgctttag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 910
Length adjustment: 10
Effective length of query: 499
Effective length of database: 900
Effective search space: 449100
Effective search space used: 449100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
