BAC Information

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BAC

Clone NameMSMg01-406A19
Chromosome4 (Build37)
Map Location 115,148,424 - 115,148,899
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666048, Foxd2, LOC100040736, Foxe3, Cmpk, Stil, Tal1, Pdzk1ip1, Cyp4x1, Cyp4a21-ps, LOC384042, LOC230639, Cyp4a12, LOC546842, Cyp4a12b, LOC435802, LOC666393
Downstream geneLOC230641, Cyp4a14, Cyp4a10, LOC666168, LOC631037, LOC100040843, Cyp4b1, LOC546843, 4732418C07Rik, 4930544O15Rik, Atpaf1, Mobkl2c, Mknk1, Kncn, 6430628N08Rik, Dmbx1, Faah, Nsun4, Uqcrh, Lrrc41, Rad54l, 1520402A15Rik, Pomgnt1, Tspan1, 1700042G07Rik, LOC433748, Pik3r3, Mast2, LOC631400
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-406A19.T7 (MSMg01no406_a19.b1)MSMg01-406A19.TJ (MSMg01no406_a19.g1)
ACCAG504336AG504337
length754748
length of high quality
(start - end)		477 (76 - 552)481 (79 - 559)
definitionCHROMAT_FILE: MSMg01no406_a19.b1 PHD_FILE: MSMg01no406_a19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:14 2005CHROMAT_FILE: MSMg01no406_a19.g1 PHD_FILE: MSMg01no406_a19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:14 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NNNTTTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTTAAAATTTCCCAGCAGTTCACATAAAAATGACTACGTT
TTTCCATCTAAACTAGCATAATGATTTTCAAGCCAAGTGATTATAATTAT
GTTCCAATTACATAGCAATAAACACAAACACATTTTAAGCATGTTTAAAT
GTGTAGTATAATGTAAGAGGGAAACTGTTCTACAACAATTCAGTATGCTT
CTGGCCCTAGTGTTCAATAAAAAAGAATGCAAAGAGCAATATTATATATC
ACACAGATTATCTAACATTAATACTTTACAAAGTGAATAATGTATTTTGG
ATATGAAGTATTTTAAGGTTGGAATGATAGCTATGTTTGGTAGACTGACT
CAAATTTTTCCAACATTGCTGTTAACTAGCTGAGCTACTTGAGTTAGGAG
ACTTGGGTGTGTCTCCAACACTGACCAGCCACCAGGGGGCACTGACATAT
TTGAGATAGCTAGACCCAGGAAACTGCATGTGAATTTGCAGCAGGCTGTC
TTGGAAAAGAACAGAGATTCCCAAGGTACCAAAAGATAGGATGCCAGTTG
CCAGACTGGATTCTGCCAGTGGGGACAAATGTTGGAGATGAGATGGAATC
ACCCTGCTTGTGGTGGAAGCTGGAAAATGTTTGAGGTTCCCTGGGGCTTG
AAGCCTGGTTCTATCTAAAATTTCGGGCCCCTTCCCTCCCAAAAAAAAAG
AAAA

NNCCCAATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGTTCTGAGCCCCAT
TTTTTAATGGGGTTATTCAATTTTCTGAAGTCCACCTTCTTGAGTTCTTT
ATATATGTTGGATATTAGTCCCCTATCTGTTTTAGAATAGGTAAAGATCC
TTTCCCAATCTGTTGGTGGTCTTTTTGTCTAATTGACGGTGTCTTTTGCC
TTGCAGAATCATAGGAGTTTCATTAGGTCCCATTTGTCAATTCTCGATCT
TACAGCACAAGCCATTGCTGTTCTGTTTAGGAATTTTTCCCCTGTGCCCA
TATCTTCAAGGTTTTTCCCCACTTTCTCCTATATAAGTTTCAGTGTCTCT
GGTTTTATGTGAAGTTCCTTGATCCACTTAGAGTTGACCTTAGTACACGG
AGATAGGAATGGATCAATTCACATTTTTCTACATGATAACAACCAGTTGT
GCCAGCACCATTTGTTGAAAATGCTGTCTTTCTTCCACTGGATGGTTTTA
GCTCCCTTGTCGAAGATCAAGTGACCATAATGTGTGGGTTCATTTCTGGG
GCTTCAATTCTATTCCATTGGGCTACTTGTCTGTCTCTATACCAGTTTCT
TGCAGTTTTTATCACAATTTGTCCGGTAGTAAAGTTTTAGTTCAGGCTTG
GGGGATTCCCCCCGGAGGATCTTTTTTTCCTGTATAAAAATTTTTGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no406_a19.b1 MSMg01no406_a19.b1 CHROMAT_FILE:
MSMg01no406_a19.b1 PHD_FILE: MSMg01no406_a19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:14 2005
         (477 letters)



>mm_chr4_115148224_115149099
          Length = 876

 Score =  876 bits (453), Expect = 0.0
 Identities = 471/477 (98%), Gaps = 1/477 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagttcacataaaaatgactacgtttttccatctaaactagcataatgattttcaagcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagttcacataaaaatgactacgtttttccatctaaactagcataatgattttcaagcca 260

                                                                       
Query: 61  agtgattataattatgttccaattacatagcaataaacacaaacacattttaagcatgtt 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 261 agtgattataattatgttccaattacatagcaataaacacaaacacattt-aagcatgtt 319

                                                                       
Query: 121 taaatgtgtagtataatgtaagagggaaactgttctacaacaattcagtatgcttctggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 320 taaatgtgtagtataatgtaagagggaaactgttctacaacaattcagtatgcttctggt 379

                                                                       
Query: 181 cctagtgttcaataaaaaagaatgcaaagagcaatattatatatcacacagattatctaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cctagtgttcaataaaaaagaatgcaaagagcaatattatatatcacacagattatctaa 439

                                                                       
Query: 241 cattaatactttacaaagtgaataatgtattttggatatgaagtattttaaggttggaat 300
           |||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 cattaataattcacaaggtgaataatgtattttggatatgaagtattttaaggttggaat 499

                                                                       
Query: 301 gatagctatgtttggtagactgactcaaatttttccaacattgctgttaactagctgagc 360
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ggtagctatgtttggtagactgactcaaatttttccaacattgctgttaactagctgagc 559

                                                                       
Query: 361 tacttgagttaggagacttgggtgtgtctccaacactgaccagccaccagggggcactga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tacttgagttaggagacttgggtgtgtctccaacactgaccagccaccagggggcactga 619

                                                                    
Query: 421 catatttgagatagctagacccaggaaactgcatgtgaatttgcagcaggctgtctt 477
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 catatttgagatagctagacccaggaaactgcatgtgaatttgcagcaggctgtctt 676


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 876
Length adjustment: 10
Effective length of query: 467
Effective length of database: 866
Effective search space:   404422
Effective search space used:   404422
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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