BAC Information

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BAC

Clone NameMSMg01-406B06
Chromosome4 (Build37)
Map Location 151,629,243 - 151,800,686
singlet/doubletdoublet
Overlap geneAcot7, Gpr153, Hes3, Icmt, Rnf207, Rpl22, Chd5, Kcnab2
Upstream geneCamta1, LOC100041960, Dnajc11, Thap3, Phf13, Klhl21, Zbtb48, Tas1r1, Nol9, EG666980, Plekhg5, Tnfrsf25, Espn, LOC100043284, Hes2
Downstream geneLOC100042028, Nphp4, LOC667039, Gm833, LOC100042089, Ajap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-406B06.T7 (MSMg01no406_b06.b1)MSMg01-406B06.TJ (MSMg01no406_b06.g1)
ACCAG504358AG504359
length765770
length of high quality
(start - end)
457 (46 - 502)245 (73 - 317)
definitionCHROMAT_FILE: MSMg01no406_b06.b1 PHD_FILE: MSMg01no406_b06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:16 2005CHROMAT_FILE: MSMg01no406_b06.g1 PHD_FILE: MSMg01no406_b06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(151,629,243 - 151,629,695)(151,800,443 - 151,800,686)
sequence
ACTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCGAGGATCCGCG
GAATTCAAGGCCATTTACGGTTATATAGTGAGACCCTGTCTTTAAAAAGG
TAAAATCTGTGATGTGAGGCTCCTCCCTCAGTGTCTGCCAGAGTCCTTTT
CTTTGTCCTTCTACTATACAGCCTTCTAGGTAGAGACTTCTGAAGGAGAC
ATTTAGCTCCTCCCAGAAATGATGGGAAATGATGACGTCTTGTTTGGGGC
TTGAAGGAATTGAGGCCATCCTGAAATAGCTCTTATGGAGTCTGGCCTAT
GTCTGTGTCAGTCTCCTCAGGCTTTGACACACTGTAGCCTTGCTTGTTGT
TTCTACAGAGATGTCTCCTGTGAGGTTCCTGTGTGTTGTCCTTTTACAGA
GTGTGTCCTGGAGTAGGTCTAGCGACGAGGGTCCCTCCTCATATGTCCCT
GGCTGTGTTGTCAACCCAGATGGGGTTGATTCTTCAATAGAGAGGGCTCT
GCCACCTTATATCATAAACACCAGGTTGACAAGTCTCTCCTACTCTGGAT
TGGTGGTGACACAGTCCCAAGTCATGTCTGTTATGAGGAGAGAAGATAGC
CGTAACCCTGGCTTGATGAGACTGTCGAAATCTTCTTTACCCCTGGGGTT
TTGTTGTCTTTTTAAACTTTTGTTCCTGGGAACTTTTTTTCACCTTCCTA
ACCCTACTTTTGGTCTTTGTAAAGGCTCTCTACGCGATAACCTTATGTCT
TTTCCCTTCGTAAAN
CGATGCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTCCCCCAATCAGGATCTAGACTGAGTGAGGAATGGTTCT
GGATGCATAAGCTGTGAACCTCACACTCCCAATAAGCCCACCACCTCTCC
TGCCCTATTGCAGAAGCTCCAAACTGTGTGACAGGCTGTCACGATGCACA
GAGCCCAGAGACCTCTGCTGGTGCAGCAGGATTTCCAATGCAAACCGTGC
TCAATAGGTCCCCTTTCCCTGGGCTTGAGGATAAACATGGCCTCCCAGCC
GGGCCCCTGGCTCGTGTTTTATTTTTGATGCTGTGGCAGGCGCCCACTTA
GAGCTTGCTTCCATGACAGGTGTGCCTTGTGCTTCTTCCCTGGGACGGCC
TTTTGCCTGGGTTCCCCCTGACACCCTCACGAGAGCACTATGACATGGCA
TCTCAGCCGCCGTTGGCCAGCCCCATCGTTCTTCAGCATGTTCCCCGTGC
TCCCAGCTACACCTGTGCATCTTGTTTGCCAGTGCTCCTCCCCTGCCTGC
CTTCTCATTTGTTCCGGCTCCTCTTACACTTTTTGTTATTTACCTGTTTT
GACCCTCGCTTTCCCTTCTCGTACTTTCCTATTGTATTCTATCCTCTCCT
CTCATGTCCTTCCCTTCCCTTTAATCTCTACATCTTCCTATATTACTTAC
CTCTCCTCTTCATCCTCCCTTTTCTTTTTCCATTTCACCCCTTTTATTCC
GATTCTTTCCCCCTTGCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no406_b06.b1 MSMg01no406_b06.b1 CHROMAT_FILE:
MSMg01no406_b06.b1 PHD_FILE: MSMg01no406_b06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:16 2005
         (457 letters)



>mm_chr4_151629039_151629895
          Length = 857

 Score =  845 bits (437), Expect = 0.0
 Identities = 449/453 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   ggaattcaaggccatttacggttatatagtgagaccctgtctttaaaaaggtaaaatctg 64
           ||||||||||||||   | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggaattcaaggccagccagggttatatagtgagaccctgtctttaaaaaggtaaaatctg 264

                                                                       
Query: 65  tgatgtgaggctcctccctcagtgtctgccagagtccttttctttgtccttctactatac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgatgtgaggctcctccctcagtgtctgccagagtccttttctttgtccttctactatac 324

                                                                       
Query: 125 agccttctaggtagagacttctgaaggagacatttagctcctcccagaaatgatgggaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agccttctaggtagagacttctgaaggagacatttagctcctcccagaaatgatgggaaa 384

                                                                       
Query: 185 tgatgacgtcttgtttggggcttgaaggaattgaggccatcctgaaatagctcttatgga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgatgacgtcttgtttggggcttgaaggaattgaggccatcctgaaatagctcttatgga 444

                                                                       
Query: 245 gtctggcctatgtctgtgtcagtctcctcaggctttgacacactgtagccttgcttgttg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtctggcctatgtctgtgtcagtctcctcaggctttgacacactgtagccttgcttgttg 504

                                                                       
Query: 305 tttctacagagatgtctcctgtgaggttcctgtgtgttgtccttttacagagtgtgtcct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tttctacagagatgtctcctgtgaggttcctgtgtgttgtccttttacagagtgtgtcct 564

                                                                       
Query: 365 ggagtaggtctagcgacgagggtccctcctcatatgtccctggctgtgttgtcaacccag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ggagtaggtctagcgacgagggtccctcctcatatgtccctggctgtgttgtcaacccag 624

                                            
Query: 425 atggggttgattcttcaatagagagggctctgc 457
           |||||||||||||||||||||||||||||||||
Sbjct: 625 atggggttgattcttcaatagagagggctctgc 657


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 857
Length adjustment: 10
Effective length of query: 447
Effective length of database: 847
Effective search space:   378609
Effective search space used:   378609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no406_b06.g1 MSMg01no406_b06.g1 CHROMAT_FILE:
MSMg01no406_b06.g1 PHD_FILE: MSMg01no406_b06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:16 2005
         (245 letters)



>mm_chr4_151800243_151800887
          Length = 645

 Score =  456 bits (236), Expect = e-133
 Identities = 242/244 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggatctagactgagtgaggaatggttctggatgcataagctgtgaacctcacactcccaa 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ggatctagactgagtgatgaatggttctggatgcataagctgtgaacctcacactcccaa 385

                                                                       
Query: 61  taagcccaccacctctcctgccctattgcagaagctccaaactgtgtgacaggctgtcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 taagcccaccacctctcctgccctattgcagaagctccaaactgtgtgacaggctgtcac 325

                                                                       
Query: 121 gatgcacagagcccagagacctctgctggtgcagcaggatttccaatgcaaaccgtgctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gatgcacagagcccagagacctctgctggtgcagcaggatttccaatgcaaaccgtgctc 265

                                                                       
Query: 181 aataggtcccctttccctgggcttgaggataaacatggcctcccagccgggcccctggct 240
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aataggtcccctttccctggccttgaggataaacatggcctcccagccgggcccctggct 205

               
Query: 241 cgtg 244
           ||||
Sbjct: 204 cgtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)