NAAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAAAGTTTTTCCCCAGAATGGACCATCTAGAGACTGCCATA
TCCAGGGATCCATCCCATAATCAGCCTCCAAACGCTGACACCATTGCATA
CACTAGCAAGATTTTGCTGAAAGGACCCTGATATAGCTGTCTCTTGTGAG
ACTAGGCCGGGGCCTAGCAAACACAGAAGTGGATGCTCACAGTCAGCTAT
TGGATGGAACATAGGACCCCCAATGGTGGAGCTAGATAAAGTACCCAAGG
AGCTAAAGGGATCTGCAACCCTATAAGTGGAACAACAATATGAACAAACC
AGTACCCCCTGGAGCTCTTGTCTCTAGCTGCATATGTATCAAAAGATGGC
CTAGTCAGCCACCAGTGGAAAGAGAGGCCCCTTGGTCATGCAAAATTTAT
ATGCCTCAGTGCAGGGGACCGCCAGGGCCAAAAAGTGGGAGTGGGTGGGC
AGGGGGGTTGGTGTGATATTTTTTTCCNCCTCTCCCCCCTTTTTCCCCCT
TCTTTTTTTGCCCTCCTCTTTTTCCCCTTCCCGCTTCTCTATTTCTCTCT
CCCCCCCTCCCTTCTTCCCCTTTCCTCCACCCCCCCTCCTCTCTTTCTTT
TTTCCTCCTCCCTTCTCCTACTCTTTCCCTTCCCTCTCCTCCTCTTCCTT
TCCTTTTTTTACTACCTCTCTTCCTTTTGCTCTTTTCTCTCTTACATTTC
TCCT

NCCTCCATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCATCCTTTCTCTAAGTAG
TTGATAGAATTATCCTTTTCGGAGCCACCTCTATCATTCAGTTGTTAAAA
CGCTCTCTCCAAAGGGTGAGATAGCTAGATGACAATGAAGCTCCTCTATT
TGGGGATTCTTCTTGATTTCACAAGATAGCTTGCTTGTTGTTGATGCTGT
GTTTTACTGCCAATGATTATCTGTCGAGCTAGACTTTTTGCTTTTGACAC
GTATGTCTTACTTTACATTGAAAAGATAATAGATGGCTATTTTGTAAGTT
CCCTTATTGTTAAGAAATAGTATCATCTATAGCCAGACTCTATAAGGATA
GATAAGACTGGGCCATTTTTGCCCCTGTAGCGTTTACCTTTCAGTCAGTA
AGATAATTGTAGATAACAGATGATTATGATATGAATTAATAAATGCTGTA
ATAGGACTCTGTACTGAGTGCCCTGAAGCACATTTGATGTGAAAATAATT
TTCTTGGCACATTATGTAACTTTTGTTCCCAGTCCACGCTTACTACTACC
GAAATAAATTCTGAAGATGTGTGTTTTGAATAGAGAAATATGTGATAAAA
TATTCTCGTCTCTCAAAAATAATTTTCTTTTCTCATATGCTCTCCTTTAT
TGACTTTCCTTTTTTTTCCTTCAACTTTACGTAACATTTTTTACATTTTG
TT

Query= MSMg01no406_b18.g1 MSMg01no406_b18.g1 CHROMAT_FILE:
MSMg01no406_b18.g1 PHD_FILE: MSMg01no406_b18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:18 2005
         (428 letters)



>mm_chr4_81944588_81945415
          Length = 828

 Score =  785 bits (406), Expect = 0.0
 Identities = 421/426 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccatcctttctctaagtagttgatagaattatccttttcggagccacctctatcattcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 ccatcctttctctaagtagttgatagaattatccttttcggagccacctctatcattcag 567

                                                                       
Query: 61  ttgttaaaacgctctctccaaagggtgagatagctagatgacaatgaagctcctctattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 566 ttgttaaaacgctctctccaaagggtgagatagctagatgacaatgaagctcctctagtt 507

                                                                       
Query: 121 ggggattcttcttgatttcacaagatagcttgcttgttgttgatgctgtgttttactgcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 ggggattcttcttgatttcacaagatagcttgcttgttgttgatgctgtgttttactgcc 447

                                                                       
Query: 181 aatgattatctgtcgagctagactttttgcttttgacacgtatgtcttactttacattga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 aatgattatctgtcgagctagactttttgcttttgacacgtatgtcttactttacattga 387

                                                                       
Query: 241 aaagataatagatggctattttgtaagttcccttattgttaagaaatagtatcatctata 300
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 aaagataatagatggctagtttgtaagttcccttattgttaagaaatagtatcatctata 327

                                                                       
Query: 301 gccagactctataaggatagataagactgggccatttttgcccctgtagcgtttaccttt 360
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 326 gccagactctataaggatagataagactgggccatttttgcccctgtatcgtttaccttt 267

                                                                       
Query: 361 cagtcagtaagataattgtagataacagatgattatgatatgaattaataaatgctgtaa 420
           |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct: 266 cagtcagtaagataattgcagataacagatgattatgatatgaagtaataaatgctgtaa 207

                 
Query: 421 taggac 426
           ||||||
Sbjct: 206 taggac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 828
Length adjustment: 9
Effective length of query: 419
Effective length of database: 819
Effective search space:   343161
Effective search space used:   343161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)