BAC Information

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BAC

Clone NameMSMg01-406D14
Chromosome4 (Build37)
Map Location 141,291,156 - 141,291,505
singlet/doubletsinglet
Overlap genenone
Upstream genePadi6, Padi4, Padi3, Padi1, Padi2, Sdhb, Atp13a2, Mfap2, Crocc, Necap2, LOC638991, Spata21, D4Ertd22e, Fbxo42, 6330545A04Rik, Arhgef19, Epha2, Gm693, Clcnka, Clcnkb, Hspb7, Gm694, Zbtb17, Spen, LOC100042951, B330016D10Rik, Fblim1, BC025833, Slc25a34, Plekhm2, Ddi2
Downstream geneAgmat, Dnajc16, Casp9, Ela2a, Ctrc, Efhd2, Fhad1, Tmem51, 9030409G11Rik, EG665983, LOC546484
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-406D14.T7 (MSMg01no406_d14.b1)MSMg01-406D14.TJ (MSMg01no406_d14.g1)
ACCAG504469AG504470
length749752
length of high quality
(start - end)
240 (73 - 312)350 (77 - 426)
definitionCHROMAT_FILE: MSMg01no406_d14.b1 PHD_FILE: MSMg01no406_d14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:27 2005CHROMAT_FILE: MSMg01no406_d14.g1 PHD_FILE: MSMg01no406_d14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTCTTAATTTGCGGCGGNAAACGACTCCTATTTCTAAGACAGCGCGG
AATTCAGGTCTGCCCAGCTAGCGTGGGCTGAAGCCAGCCTGGGATGTACT
ATACTCTGTCTCAAAATGGGGGGAAAAACCCAGGCCAGGAGAAGGCTCAG
TGGGTGTGGTGGTTTGAATGAGAACGAGCCCCTATAGGCTCAGAGAAAGG
CACCATTAGGAGGTGTGTCCTAGGTAGAGGAAGTGTGCACTGGGTTAGGG
CTTTAAGGTTTCAGAAATTCATTCCAGACCCAGTTGCTCACTGAATCTCC
CTGCTGCCTGCTTTATTATTTGTCGAACTCTCAGCTCTTTGCCCAGCCCC
TTGTCTGCCTGAGTGCCTCCATGCTCCCCAAAATGATGACAGTGGACTAA
CCTCTTAATTGTATGAAGGTCAGTCCCAATTAAATGTTTTCCTTATAAGA
GTTGCTGCGCTGCTGGAGAGATATCTCATTGGTTAACAGTACTGATTGTT
TTTCCCGAGGTCCTGATTTTCAATCTCATTTTCTCCTGTTTAGCTCACGA
TTACCTTGCAATGAGATTCTATGTCCTCTTTCTTTTGCGTTTTGACTCCT
CTCCCCTCTTTCTTTTATTATATACCCTCTCGTCCCCTTCTAATTTTTTA
TTATATTTCATCTCCTTTCTTATATAGCCCTTTATTCTCCTCTCAATTCT
TATCTCCTCGCCTTTTTCCGTGTTTCCCCTTGTTCTTTTCTTCTTTCTG
NTTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTAGGCAAGCGTTCTATCACTGAGC
CACACCCTCAGTACTTTCGCTCCTGTCTTTTTTAATCGAATTATTATTTT
TGAACTATTGTCCTTCATAACAACCATTCATGACAAAACCTGATTTGGAC
AAGCGTGAGCAACCAGCCCTGACCAAAGTAGCTGCAGGGAAGCTGCAGGG
AAGCTATGCCCAGGACTCCGCATCCCTGCATCAGGCAGGATCTGACCCTT
TCCCTGAAGCAGGAAAGTCCCTAAGTGGGTGCAGGCCAGACACACCCCGA
CTGCGTCTCTCAGGATCCAAAGCTTTCCAGACCGCGGAGTGGGAGACGAG
TGGGTTCCAAGACTGAGGAAAGAGCAGCAGCACGAAGAAGCTGCACTCCA
CAGGTTTAAGGTTGGACCCTTACTTCCGCAGTATCCACCCGGGCCACAGT
CACCTAGCAACCCATCTCCACATTCGCAGAAGTAGGCATTGGCTGACAGT
CTCTGTGAGTAGACGGACCCGCCCATCACGCCTGTGCGCCACAGGTTGTG
CTGTTGCGCAAGCCCATTTACGGATGAAAGCTCCTGCCCCACAACCCCTT
CCTGGGCCCAATGTGATCCGCATTAGATGTCCTTAAATGACTTTCATATA
ATTTTCCTTTAATTTGCCCTGCGCAACTTACTCCATTTAATAACCTTTTA
CT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no406_d14.g1 MSMg01no406_d14.g1 CHROMAT_FILE:
MSMg01no406_d14.g1 PHD_FILE: MSMg01no406_d14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:27 2005
         (350 letters)



>mm_chr4_141290921_141291670
          Length = 750

 Score =  669 bits (346), Expect = 0.0
 Identities = 349/350 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   taggcaagcgttctatcactgagccacaccctcagtactttcgctcctgtcttttttaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 taggcaagcgttctatcactgagccacaccctcagtactttcgctcctgtcttttttaat 526

                                                                       
Query: 61  cgaattattatttttgaactattgtccttcataacaaccattcatgacaaaacctgattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 cgaattattatttttgaactattgtccttcataacaaccattcatgacaaaacctgattt 466

                                                                       
Query: 121 ggacaagcgtgagcaaccagccctgaccaaagtagctgcagggaagctgcagggaagcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 ggacaagcgtgagcaaccagccctgaccaaagtagctgcagggaagctgcagggaagcta 406

                                                                       
Query: 181 tgcccaggactccgcatccctgcatcaggcaggatctgaccctttccctgaagcaggaaa 240
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 tgcccaggactccacatccctgcatcaggcaggatctgaccctttccctgaagcaggaaa 346

                                                                       
Query: 241 gtccctaagtgggtgcaggccagacacaccccgactgcgtctctcaggatccaaagcttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 gtccctaagtgggtgcaggccagacacaccccgactgcgtctctcaggatccaaagcttt 286

                                                             
Query: 301 ccagaccgcggagtgggagacgagtgggttccaagactgaggaaagagca 350
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 ccagaccgcggagtgggagacgagtgggttccaagactgaggaaagagca 236


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 350
Length of database: 750
Length adjustment: 9
Effective length of query: 341
Effective length of database: 741
Effective search space:   252681
Effective search space used:   252681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)