BAC Information

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BAC

Clone NameMSMg01-406E03
Chromosome4 (Build37)
Map Location 32,318,158 - 32,452,784
singlet/doubletdoublet
Overlap geneBach2
Upstream geneMap3k7, LOC665218, LOC665228, LOC665232
Downstream geneGja10, Casp8ap2, Mdn1, Lyrm2, Ankrd6, LOC665298, Rragd, 4933421O10Rik, Ube2j1, LOC100039142, Gabrr2, Gabrr1, Acy1l2, Srrp, Pnrc1, Rngtt
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-406E03.T7 (MSMg01no406_e03.b1)MSMg01-406E03.TJ (MSMg01no406_e03.g1)
ACCAG504495AG504496
length774775
length of high quality
(start - end)
123 (135 - 257)245 (74 - 318)
definitionCHROMAT_FILE: MSMg01no406_e03.b1 PHD_FILE: MSMg01no406_e03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:30 2005CHROMAT_FILE: MSMg01no406_e03.g1 PHD_FILE: MSMg01no406_e03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:30 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,452,662 - 32,452,784)(32,318,158 - 32,318,402)
sequence
CTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCCGCACCTGCN
NCGNAANNCCACAGTGATAGGCTTGCACTCGCTCACACACCCAACCACAN
GGGCAAAACACAAAGGAAGGGGAAGCTTTACCCCAAAGCTGGTCTCACAG
ACACAATGCTACTCAAAGCACATTGTCAGCGATCTGCAATTTATATGGAC
ATAATAAGCTCCATGCCTAAGACACAGCAGCCTAAACCACCACCACCAAG
ACACAGCATTTTTTTAAAGGGGCAGATTACCCACAGCGCGAGGCTCTCCC
ATGCGGCTGGGCCAGCAGCAGGACTATTTTTTTTTTCCCCGACGNGAGGG
CCAGACGCCCCAAGGAAGGGAGCCANCCCACCCCCCCCACACAGAAACAA
GCAGGAAGAANCGCGAGGACGCCCAACAAAGGAAGCCGGCAGAGGACAAC
CGCGAACAACCGACACGAGGCGACACGAGAAAGCCCAGCCGACACACGAA
ACACACGACCACCCACAAAGGAAACCGACACGACAGAAAAACCGAGACAA
CACCAAAGGCAAACGCCGCCCAGCACCAGCAAGCCCCGAGACACCGGCCA
NCAGACACAGAAAAAAACCCCCCAACAAGGGCACCAACGGCACAAACCGC
GCCCACACAACCCCGCCCAGCTTTTCCTTGCACACCACGACAGCCAAGGA
ACCCACCAACACCCCACACACCCCGCCCAAGGGAAACACCAAGACCCACA
CCACAAACCCACAAACCGCCCCAC
CAATGCAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACAGGCCAAGCAGCAGGTAACGTGATA
GACATAAGATAAACATTTTATCTGCCACTGAACTTGGAAACAGTAAGGTT
TGAAATTTAAAACAATATATTGTTTGCTCAGATCTCCAGAATGACGCCAG
CTTTTCCGCAAATAACTGTGTAGGGTTATAGTGAATTTATGCACAACATT
CTCGGACATCATTGCCTTCTGTAAGGTTAGCAAGCAGGACACTGAACTTG
GGAACTCGGGTTCCTCCTTTTTTTTACAGCCCGGAACTAATCCTGAGAGT
CATCACAGATCAATCCACATTTCGCAACACCAGACTTTCCAGCTTCAGAA
AAATTAAGGATAAAGATAGAGAAAACCTGCCAACCGGATCCTGCTGTTGA
CAAGACCTGGGGAAGCTATAGAACCCAGGGTGCCAATGTGGAGGAAGGGT
ACTGTAGACCCAATATGCTTCCAGCAAGGCCACCAATATTTGTTTCCGGT
CAAGCCACATAGGACCTGAGTCACCTCCTATGCGTGTAACATTGTCACCA
CCGACGTCTCTCCTCTTGTTATAGTGGCTATCGTCCGCCACTCTTTTTTG
CATCCCTTTTTTCCTTTTTTTTCCTCCACTCCTTCCCACTCTACTTCACA
TTATTCTAATTCTGAATTTTGCATTTTTCCATCTATTTATTTTCTTTTTT
ATTCTATTCTTCTCCCTCCACTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no406_e03.b1 MSMg01no406_e03.b1 CHROMAT_FILE:
MSMg01no406_e03.b1 PHD_FILE: MSMg01no406_e03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:30 2005
         (123 letters)



>mm_chr4_32452462_32452984
          Length = 523

 Score =  230 bits (119), Expect = 2e-65
 Identities = 122/123 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaagctggtctcacagacacaatgctactcaaagcacattgtcagcgatctgcaatttat 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 323 aaagctggtctcacagacacaatgctactcaaagcacactgtcagcgatctgcaatttat 264

                                                                       
Query: 61  atggacataataagctccatgcctaagacacagcagcctaaaccaccaccaccaagacac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 atggacataataagctccatgcctaagacacagcagcctaaaccaccaccaccaagacac 204

              
Query: 121 agc 123
           |||
Sbjct: 203 agc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 123
Length of database: 523
Length adjustment: 8
Effective length of query: 115
Effective length of database: 515
Effective search space:    59225
Effective search space used:    59225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no406_e03.g1 MSMg01no406_e03.g1 CHROMAT_FILE:
MSMg01no406_e03.g1 PHD_FILE: MSMg01no406_e03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:30 2005
         (245 letters)



>mm_chr4_32317958_32318602
          Length = 645

 Score =  474 bits (245), Expect = e-138
 Identities = 245/245 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   acaggccaagcagcaggtaacgtgatagacataagataaacattttatctgccactgaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acaggccaagcagcaggtaacgtgatagacataagataaacattttatctgccactgaac 260

                                                                       
Query: 61  ttggaaacagtaaggtttgaaatttaaaacaatatattgtttgctcagatctccagaatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttggaaacagtaaggtttgaaatttaaaacaatatattgtttgctcagatctccagaatg 320

                                                                       
Query: 121 acgccagcttttccgcaaataactgtgtagggttatagtgaatttatgcacaacattctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acgccagcttttccgcaaataactgtgtagggttatagtgaatttatgcacaacattctc 380

                                                                       
Query: 181 ggacatcattgccttctgtaaggttagcaagcaggacactgaacttgggaactcgggttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggacatcattgccttctgtaaggttagcaagcaggacactgaacttgggaactcgggttc 440

                
Query: 241 ctcct 245
           |||||
Sbjct: 441 ctcct 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)